Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01544 ATGGAAATTTTATCTTCTATTGTTGGAACAGTAGCAGAACATACTGTTGTGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGCAATTTAAGTATGTTAGCGGTTCATGTTAAAGACCTTGAGGCTGCAAAAGAAAGTATAACCCATTCCGTTGAAGAGGAAAAGAGAAACGGCAAAAAGATTGAAAGAGATGTGACGAGCTGGTTAGAGAAAGTGGATGAGGTCATTGAAAAGGCAAATCAGATTCAAAATGATCCTCGCCGTGCCAATGCTAGGTGCTCAGCATGGCCATTCCCCAATTTGATTTTACGTCATCAACTAAGTAGGAAGGCCACAAAAATCGTAAAAGATGTTTTTGAAGTTAAAGAAAATGGGAAGTTTGATCGAATTGGTTACCTTCCCACCCTAGATGGAGAAGCCTCCTCCTCCTCAACAAGGGGTGGTGAAAAGTATGAGACAAGAGAGTTACTTAAAGAGAACATTATGAAGGCTCTAGCACACCATAATTCAAGCAACATTGGGGTCTATGGGCTGGGTGGGGTGGGTAAGACCACTCTGGTGAAGGAAGTTGCTGAAATATCCAAGAAACACAAATTGTTCGATGCAGTTGTTAAAACCCATGTATCAGAAACTCCAGACATTAGAAAAATTCAAGGGGAGATTGCAGATTTGTTGGGTCTACGATTCGATGAAGAGACTATTCTCGGAAGAGCACATCGCCTAAGGCAAAGAATCAAGATGGAAAAAAATATCCTTATCGTTCTAGATAATATATGGACCATACTTGATTTGGAGAAAGTGGGAATTCCATTGTGTAATGAACATAATGGTTGCAAATTGTTGATGACATCTAGAAATCAAGATGTGTTGTTGCAAATGGATGTTCCAAAGGATTTCACTTTCAAACTTGGACTTATGAGTGAAAATGAGACATGGAGCTTGTTTCAATTTAAGGCTGGAGATGTGGTAAAAGATAGCAAATTGAAAGGTGTAGCAATTCAAGTTGCACATAAATGTGCAGGTTTGCCTCTTGTGGTAGTGGCGGTAGCTCAAGCATTGAAATATAAGAGGGATGTTCAATCTTGGAAAGATGCATTAAGGAGATTACAAAGTGATCATCATACAATTTTTTCTGCTTTGGAATTGAGTTATGACTCATTGGAGAGTGATGAAATGAGGGATGTCTTCTTGCTTTTTGCACTATTAGTAGGTAATCATGTACGGTTCTTTCTGAAAGTTGCAATGGGTTTGGATATATTAAAGCATGTTAATACTGTGGATGATGCTAGAAACAGACTTTATTATATAATCCATTCTTTGGAGGCGACTTGTCTTTTGCTTGAAGTTAAAACAAGTGGAATAATCCAAATGCATGACTTTGTTCGTGATTTTGCTATCTCAATAGCACGTAGGGACAAACATGTATTTCTAAGTAAACCATCAGATGAGGAACCTCCAACCAAGGATTTTTTAACAAGGTGCACGCAGATCATTCTTGATAGGTGTATGTATGAGCTTCCTGAAATGATTGACTGTCCAAACATTAAGTTTTTTTTTTTTGTACAATAA 1578 0.3796 MEILSSIVGTVAEHTVVPIGRQASYLIFYKGNLSMLAVHVKDLEAAKESITHSVEEEKRNGKKIERDVTSWLEKVDEVIEKANQIQNDPRRANARCSAWPFPNLILRHQLSRKATKIVKDVFEVKENGKFDRIGYLPTLDGEASSSSTRGGEKYETRELLKENIMKALAHHNSSNIGVYGLGGVGKTTLVKEVAEISKKHKLFDAVVKTHVSETPDIRKIQGEIADLLGLRFDEETILGRAHRLRQRIKMEKNILIVLDNIWTILDLEKVGIPLCNEHNGCKLLMTSRNQDVLLQMDVPKDFTFKLGLMSENETWSLFQFKAGDVVKDSKLKGVAIQVAHKCAGLPLVVVAVAQALKYKRDVQSWKDALRRLQSDHHTIFSALELSYDSLESDEMRDVFLLFALLVGNHVRFFLKVAMGLDILKHVNTVDDARNRLYYIIHSLEATCLLLEVKTSGIIQMHDFVRDFAISIARRDKHVFLSKPSDEEPPTKDFLTRCTQIILDRCMYELPEMIDCPNIKFFFFVQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01544 525 Gene3D - 308 391 IPR042197 -
Trre6g01544 525 PRINTS Disease resistance protein signature 175 190 - -
Trre6g01544 525 PRINTS Disease resistance protein signature 248 262 - -
Trre6g01544 525 PRINTS Disease resistance protein signature 342 356 - -
Trre6g01544 525 Gene3D - 144 301 IPR027417 -
Trre6g01544 525 Coils Coil 355 375 - -
Trre6g01544 525 SMART AAA_5 172 308 IPR003593 GO:0016887
Trre6g01544 525 Pfam NB-ARC domain 160 389 IPR002182 GO:0043531
Trre6g01544 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 401 IPR027417 -
Trre6g01544 525 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 34 521 - -
Trre6g01544 525 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01544 Trre-Chr6 12671948 12673525 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01544 176 443 WRKY Transcription Factor Family AT5G45050 25.086 1.68e-07 52.4