Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01527 ATGTACCATTTTCTGATAGCTAGATTCACTCATAGAATAACCAATCATTCTACTCTTCATTGCTGCAATGCTTTTTCTATATTCTTCAATTCTCGTTCTTTCACTATTTCCAACACAAATCACCAAGATCACTCTTTTACGTTATCAAGCTTCATTGATTCATGTGGGTTGTCCCCTAAAACATCCCTTAAACTCTCTAAAATGTTGCAAATCAGAAACTCTGATGATGGCCCAAATGCTGTTATTCAACTTTTCAGAAACTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAGACACCCTATTGTGATTTTATCAAACCCCGAAAAGACCCTTTTGCCCAAACTCAAGTTTTTGCAATCCATTGGGGTTTCAACCACTGATCTCCCCAAAATTCTACTTATGAACACTAATTTGTTAAAACTAAGTTTGGAGAAAAACCTTATACCTCGTTTTCACATTATCAGGAGCCTTGTTCGCGATGATAAAGAGGTTGTTTCGGTTTTGAAGCATTGGTCATGGACCTTTTACAATAATTCCATGGTAAATGATTCTGTTCCGAATATCGAGGTTTTGAGGAAGCTTGGTGTGCCTCAACGTTTCATTTCCCTTTTGGTATGCAATTTTCCCAAAGTAGCATTCACCAAACATTCTAGATTTGTTGAGGCTGTTAATTTTGTCAAGGAAATGGGGTTCAATCCTTTGAAATCGAATTTTGTTTTGGCACTTCAAGGAATTGTAAAGATGGACAAAGAGACTTGGGAGTCAAAATTGAAGATTTTTCAGGGGTGGGGCTGGTCGAAAGATATCTATGTTTCGGCTTTCCAAAGATATCCTCAGTATATATTGATCTCAGAAAAAAAGATTATGAAAACAATGAACTTCTTGGTGAAGGATATGGGTCTTACCCCAGAAGACATTGCTAGAATCCCTGGTATTCTGAACCGCAACTTAGAGAAGACAATAATGCCTAGATGTGCAGTTGTTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGAGCTTAAGTAGCTTTATTATCATAAGTGAGAAAAAGTTTTTGGAGAGATATGTTACCCGATATCAGAAAGATTTGCCACTCTTATTGGATGCATATAAAGGTCAGAATTCCGATTGA 1149 0.3673 MYHFLIARFTHRITNHSTLHCCNAFSIFFNSRSFTISNTNHQDHSFTLSSFIDSCGLSPKTSLKLSKMLQIRNSDDGPNAVIQLFRNYGFSDSQLSTLVKRHPIVILSNPEKTLLPKLKFLQSIGVSTTDLPKILLMNTNLLKLSLEKNLIPRFHIIRSLVRDDKEVVSVLKHWSWTFYNNSMVNDSVPNIEVLRKLGVPQRFISLLVCNFPKVAFTKHSRFVEAVNFVKEMGFNPLKSNFVLALQGIVKMDKETWESKLKIFQGWGWSKDIYVSAFQRYPQYILISEKKIMKTMNFLVKDMGLTPEDIARIPGILNRNLEKTIMPRCAVVKILKSRGLIKSSLSLSSFIIISEKKFLERYVTRYQKDLPLLLDAYKGQNSD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01527 382 PANTHER CGI-12 PROTEIN-RELATED 43 365 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 Pfam mTERF 82 235 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 Pfam mTERF 248 358 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 Gene3D Transcription termination factor 3, mitochondrial 137 369 IPR038538 -
Trre6g01527 382 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 SMART mt_12 239 269 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Trre6g01527 382 FunFam Mitochondrial transcription termination factor-like 146 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01527 Trre-Chr6 12437759 12438907 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre6g01527 mTERF 5.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01527 K15032 - gmx:106799612 407.912