Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01526 ATGAATCCAAACATCAATGATGAAATCCCACTTCAGACTCTGTTATCGTTATTTATCTGTTTCCAACACAAATCATCATCAAGAAACTCTGAGGATGGCCCAAATGCTGTTATTCAACTTTTCAGAAACTATGGCTTCTCTGATTCCCAATTATCAACCCTTGTTAAGAGACACCCTTTTGTGCTTTTATCAAAACCTGAAAAGACCCTTTTGCCTAAACTCAAGTTTTTGCAATCCTTTGGGGTTTCAATCACTGATCTCCCCAAAATCCTAATTATGAACCCTGGTTTTTTAAAACTAAGTATGGAGAAAACCCTTATGCCTCGTTATCACTTTATTAGGAGCCTTGTTCGCAATGATAAAAAGGTAGTTTCAGTTTTTAAGCGTTGGAGGTTTAACTATTACGGTTATTCCATGGTTCCAAACATTGAGGTTTTGAGGAAACTTGGTGTGCCTCAAAGTTGTGTTTCCCTTTTGGTATCCAATTTTCCCAATGAAGCATTCGCCAAGCATTCTATATTTGTTGAGGCTGTTAATTTTGTCAAGGAAATGGGGTTCGACCGTTTGAAATCGAATTTTGTTTTGGCACTATATGTAATTGTGAAGATGGACAAAGAGACATGGGAATCAAAATTGAAGATTTTTGAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGCGTTTCAAAAGCATCCTCAGTATGTGACGGTCTCAGAAAAAAAAATTATAAAAACAATGAACTTCTTGGTGAAGGATATGGGTATTGCCCCAGAAGACATTGCTAGAATCCCTACTATTCTGAACCGCAACTTGGAGAAGACAATAATGCCTAGATGTGCAGTTGTTAAGATTTTGAAGTCAAGGGGGTTGATAAAGAGTAGTTTGAGATTAAGTAGCTTTCTTATCATAAGTGAGAAAGTATTTTTGGAGAGATATGTTACCCCATTTCAGAAAGATTTGCCACTGGTATTGGCTGTATATGAAGGTCAGACGTTAGATTGA 1005 0.3721 MNPNINDEIPLQTLLSLFICFQHKSSSRNSEDGPNAVIQLFRNYGFSDSQLSTLVKRHPFVLLSKPEKTLLPKLKFLQSFGVSITDLPKILIMNPGFLKLSMEKTLMPRYHFIRSLVRNDKKVVSVFKRWRFNYYGYSMVPNIEVLRKLGVPQSCVSLLVSNFPNEAFAKHSIFVEAVNFVKEMGFDRLKSNFVLALYVIVKMDKETWESKLKIFERWGWSKDICLLAFQKHPQYVTVSEKKIIKTMNFLVKDMGIAPEDIARIPTILNRNLEKTIMPRCAVVKILKSRGLIKSSLRLSSFLIISEKVFLERYVTPFQKDLPLVLAVYEGQTLD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01526 334 SMART mt_12 226 257 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 SMART mt_12 52 83 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 SMART mt_12 258 292 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 PANTHER CGI-12 PROTEIN-RELATED 24 316 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 Gene3D Transcription termination factor 3, mitochondrial 12 133 IPR038538 -
Trre6g01526 334 Gene3D Transcription termination factor 3, mitochondrial 134 321 IPR038538 -
Trre6g01526 334 Pfam mTERF 200 310 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 Pfam mTERF 38 245 IPR003690 GO:0003690|GO:0006355
Trre6g01526 334 FunFam Mitochondrial transcription termination factor-like 102 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01526 Trre-Chr6 12434531 12435747 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre6g01526 mTERF 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01526 K15032 - gmx:106799612 360.147