Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01499 ATGAAAGGGGAATTGTCGAGGAAGACATCGTTTTTGGGTTTGAAGCTATGGGTTTTGATAGGAGTAGGTGTTGGTGCATTTATAGTTCTGATTCTTGGTTTATTATCTATATGGATAACGTTTCGGAGAAAAACACGGAGATCGGTGGACAAGTACTCTTCATCGCAAATACCACATGTCTCGAAAGATATCAAAGTAGACAAGGTTGGTGTACAGCCGTCTCATGATCAAGTAGAGAGTATGTCTATTAATGTTCATGATAACATGGCAAGTGATAAAAATTCAGATAAGTTGTTTGTTCATTTGAGTAAATCTAGTGATCCTGATAATATTAGTCAGTCTAGCTCGGTTTATCACCACGAGAGAGGATTAAGTTCGATGTCTGGAGAAGATGGAAACTTTGGAACTGTTAAGAAGCAGTATATGGTAACTGCTTCTCCTCTGGTTGGATTGCCTGAAGGTTCGCATCTTGGGTGGGGCCATTGGTTCACACTCAGAGATCTCGAACTTTCAACTAACCGTTTCGCTGCTGCGAATGTGATCGGTGAGGGTGGATATGGAGTTGTTTATAAGGGAAGATTGATCAATGGATCTGAGGTTGCAGTGAAGAGACTTCTTAACAATTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTCGACGCTATAGGTCACGTCAGACATAAACATCTTGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCACAGGTTGCTTGTCTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGTGCAATGAGACAACATGGAGTACTTACGTGGGAAGCTCGCATGAAAGTTATTCTAGGGACAGCGAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCGAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCAAGCGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGTTATGTTGCACCCGAATATGCTAATACCGGCTTGTTAAACGAGAAGAGTGACATTTACAGTTTTGGTGTTCTCTTACTAGAAGCGATCACCGGAAGGGACCCTGTAGACTATACGCGTCCTGCTAACGAGGTGAATCTTGTTGAGTGGATGAAGATGATGGTGGGGACAAAAAGGATCGAGGAAGTTGTGGACTCCAGCCTTGAAGCAAAACCGCCAACTCGTGCCTTAAAGCGTGCCCTTCTTGCTGCATTTAGGTGTGTTGATCCTGATTCTGAGAAGAGACCTAAAATGAGTCAGGTTGTAAGGATGCTTGAAGCCGATGAATATCCTTTCAGAGAGGATCGAAGGAATAGAAGGAGCCGTACCGCCAGCATGGAAATTGAATCTCTAAAGGATATCTCCGGTCCTTCTGATATCGATAAGACGACGAAAAGTTCCGAAGAATGTGCACTCGAGACAACTCAATAA 1494 0.421 MKGELSRKTSFLGLKLWVLIGVGVGAFIVLILGLLSIWITFRRKTRRSVDKYSSSQIPHVSKDIKVDKVGVQPSHDQVESMSINVHDNMASDKNSDKLFVHLSKSSDPDNISQSSSVYHHERGLSSMSGEDGNFGTVKKQYMVTASPLVGLPEGSHLGWGHWFTLRDLELSTNRFAAANVIGEGGYGVVYKGRLINGSEVAVKRLLNNLGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSSESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWMKMMVGTKRIEEVVDSSLEAKPPTRALKRALLAAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRRSRTASMEIESLKDISGPSDIDKTTKSSEECALETTQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01499 497 CDD STKc_IRAK 181 447 - -
Trre6g01499 497 PANTHER OS01G0323000 PROTEIN 2 468 - -
Trre6g01499 497 SUPERFAMILY Protein kinase-like (PK-like) 158 448 IPR011009 -
Trre6g01499 497 MobiDBLite consensus disorder prediction 475 489 - -
Trre6g01499 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Trre6g01499 497 MobiDBLite consensus disorder prediction 453 497 - -
Trre6g01499 497 FunFam serine/threonine-protein kinase PBS1-like 152 250 - -
Trre6g01499 497 FunFam Putative receptor-like serine/threonine-protein kinase 251 461 - -
Trre6g01499 497 Gene3D Transferase(Phosphotransferase) domain 1 251 464 - -
Trre6g01499 497 Coils Coil 195 215 - -
Trre6g01499 497 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Trre6g01499 497 MobiDBLite consensus disorder prediction 453 468 - -
Trre6g01499 497 Pfam Protein kinase domain 178 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01499 497 ProSiteProfiles Protein kinase domain profile. 175 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01499 497 Gene3D Phosphorylase Kinase; domain 1 157 250 - -
Trre6g01499 497 SMART serkin_6 175 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01499 Trre-Chr6 12139072 12141547 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01499 13 449 Trihelix Transcription Factor Family AT1G70460 40.632 1.32e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre6g01499 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01499 - - gmx:100813931 801.586