Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01463 ATGTTAATTTCTAGATATATATATCCAAATAGTTCTACAATTGCTTGTATTGTTTGCAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCTACTAACACAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAATAGACATATCCTTGGTGAAGCTTTGGGATCTCTGAGTCTCAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTGGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTACGAGCTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAACAAAATTTGATGCCAGAGACAATGTGTGAGTCCTTACCTTCACAAACATATGACCGAAATTTCTTTCCGGTTAATCTTCTTGGATCGGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCTCTCCAACTTGTGTAA 558 0.3817 MLISRYIYPNSSTIACIVCSVRATIERYKKACAASTNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLLADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPETMCESLPSQTYDRNFFPVNLLGSDQQQYSRQDQTALQLV 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01463 185 Pfam K-box region 44 130 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g01463 185 Coils Coil 119 139 - -
Trre6g01463 185 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Trre6g01463 185 ProSiteProfiles K-box domain profile. 46 136 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre6g01463 185 Coils Coil 49 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01463 Trre-Chr6 11838381 11840212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01463 20 185 MADS-box Gene Family AT3G58780 64.368 6.59e-69 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01463 K09264 - gmx:100808734 291.967