Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01456 ATGTCGTCATCAAATTCACCTTGTGCAGCGTGCAAGTATCTCCGACGAAAGTGCACCCAAGAATGCGATTTTGCTCCCTATTTCCTCCCCGAAAGTCCACAGAGATTCGCTAATGTGCACCGCGTGTTCGGTGCAAGCAATGTCGCTAAGCTCTTAAAAGAGCTTAACGCGGCTGACCGTGAAGATGCAGTGAAATCCCTAGCGTACGAGGCAGAGTCTCGTATAAAAGATCCTGTCTACGGCTGTGTTGGTTTGATCTCGATGCTCCAACAACGGTTGAAAGAAATCCAACAAGAGCTCCATGCGGCGAAAAGGGAGCTCTCCAGTTACAATCTGAATCCTCAAACTATGCAGTACTTGTTGGCGCATTCCGGAACGGTTGTAATGCCTCAGCAGCACCAGCAGCAGCAGCAATGGAATAATGCGCAATTCGCGGGTTTTGCTAACAATTTTCCTCCTGAGATTGTTGGAGGAGGTGGGATAGTTATTCGTGATGTTCAGCAGCAGCAGCAGAATCAGGAGCTTCTAGAAGCTCATCAGTTATTTGCTGCTCAGCAGCAGTATATGCTTAGGTTTGGTGGTGGTGGACATCAGATGGGTGCTGGTGGCGGTGTTGCCGCTGTTTCTGATCATGCTGATGGGGGTCAGTCATTAGGAATTGGAAATTTTGATAATGCTGCTGGTGCTGGTGGTGGCGGTGGTGCCGCCGGGGTTGGTTATTATCAGATTCAGCAACAAGGAGGAGGAGAACAACAACAACAACAACAACAGAATTATCATCATAATGTTGGGGTTCCTGCTGCTGCTGCTGCTCATGGTAATCCAATTGAGGCACAGCTTTTGTTGTCTCCACAGAATCAGGAAAATGGTGAGGATGGTAAAAGTGTTGGTAGCACACATCATTCTTGTTGA 912 0.4803 MSSSNSPCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNAADREDAVKSLAYEAESRIKDPVYGCVGLISMLQQRLKEIQQELHAAKRELSSYNLNPQTMQYLLAHSGTVVMPQQHQQQQQWNNAQFAGFANNFPPEIVGGGGIVIRDVQQQQQNQELLEAHQLFAAQQQYMLRFGGGGHQMGAGGGVAAVSDHADGGQSLGIGNFDNAAGAGGGGGAAGVGYYQIQQQGGGEQQQQQQQNYHHNVGVPAAAAAHGNPIEAQLLLSPQNQENGEDGKSVGSTHHSC 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01456 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 137 - -
Trre6g01456 303 Coils Coil 86 113 - -
Trre6g01456 303 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Trre6g01456 303 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01456 Trre-Chr6 11741540 11742451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01456 1 131 AS2 family AT5G66870 64.122 1.77e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g01456 LOB 1.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01456 - - psat:127080212 296.975