Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01418 ATGAGTTGTTTTCCATGTTGTGCACCATCACAAGAAAGGGTCAACAGAAAGTCATTGAAGAAAAGTATTAAGGAATACCATGATGCAAAAACTTTAACCTCATTTGCTAATATCTCTTTTAAAACTGATAGTGGCAAGAGAAGGTTTATAGCAGATGAGATAGCAAAGCTTGGAAAAGGAAATGCTACCTCTAAGATTTTTACGTATCGCGAACTATGTACTACAACTCAGAATTTTCACCCTACCAATATGATTGGAGAAGGAGGCTTTGGAAGGGTATACAAAGGAACAATTAAAGACACAGATCAAGTTGTTGCTGTGAAGCAACTTGACAGAAATGGATTTCAAGGGAATAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCATCACCCTAACCTTGTCAATTTAGTAGGGTATTGTGCTGAAGGTGATCAAAGGGTTTTGGTATATGAATATATGCCTAATGGTTCCTTAGAAGATCACTTGCTTGATTTAGCTCCTGGTAAAAAGCCTTTGGACTGGAAGACAAGAATGAAAATTGCAGCAGGAGCGGCAAAAGGGCTTGAATATTTACACGAACAAGCAAACCTTCCGGTGATATATCGCGATTTCAAAGCATCAAATATACTATTAGATGAAAACTACAATCCAAAGCTTTCTGACTTTGGACTTGCAAAGCTCGGTCCGACCGGTGATAAAACGCATGTTTCAACAAGAGTGATGGGAACTTATGGCTATTGTGCTCCGGAGTATGCATCAACAGGGCAATTAAGTACAAAATCAGATGTGTATAGTTTTGGAGTCGTGTTTTTGGAGATTATCACAGGAAGAAGAGTCATTGACAATTCAAGACCATCAGAAGAACACAATTTAGTCATTTGGGCACAACCTCTTCTAAGAGACAGAAAGAAATTCACACAAATGGCAGATCCATTGCTAGAAGGCAAATACCCTATAAAGAGTCTATACCAAGCTCTAGCTGTTGCAGCAATGTGTCTCCAAGAGGAAGCTGATACTCGGCCTTTAATCAGTGATGTAGTTACAGCTCTTGAATTTTTAGCAAAGAAGAAAGATGATGATGATGATGATGATGGAAAAAATGTTACAAAAGAGTCTTTTTCTTCCCAAAGTGAAAGTGATAATGGAAACAATGAATCTAATGAAGTAAAGAATGATGATGACGAAGAGGATGAAGATGATGATGGTGATGACGATGACGATGATGAAGAAGAGGATGATGATGACGAGGATGACGACGATGATGATGAAGACGTTAAAGTTAAAAGAAGACATAGTCAATGA 1311 0.3791 MSCFPCCAPSQERVNRKSLKKSIKEYHDAKTLTSFANISFKTDSGKRRFIADEIAKLGKGNATSKIFTYRELCTTTQNFHPTNMIGEGGFGRVYKGTIKDTDQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGDQRVLVYEYMPNGSLEDHLLDLAPGKKPLDWKTRMKIAAGAAKGLEYLHEQANLPVIYRDFKASNILLDENYNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLSTKSDVYSFGVVFLEIITGRRVIDNSRPSEEHNLVIWAQPLLRDRKKFTQMADPLLEGKYPIKSLYQALAVAAMCLQEEADTRPLISDVVTALEFLAKKKDDDDDDDGKNVTKESFSSQSESDNGNNESNEVKNDDDEEDEDDDGDDDDDDEEEDDDDEDDDDDDEDVKVKRRHSQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01418 436 FunFam Serine/threonine-protein kinase PBS1 156 372 - -
Trre6g01418 436 CDD STKc_IRAK 85 354 - -
Trre6g01418 436 MobiDBLite consensus disorder prediction 373 387 - -
Trre6g01418 436 ProSiteProfiles Protein kinase domain profile. 79 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01418 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Trre6g01418 436 FunFam Serine/threonine-protein kinase CDL1-like 50 155 - -
Trre6g01418 436 PANTHER OS07G0668900 PROTEIN 3 365 - -
Trre6g01418 436 Pfam Protein kinase domain 81 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01418 436 Gene3D Transferase(Phosphotransferase) domain 1 156 381 - -
Trre6g01418 436 MobiDBLite consensus disorder prediction 360 436 - -
Trre6g01418 436 SUPERFAMILY Protein kinase-like (PK-like) 65 361 IPR011009 -
Trre6g01418 436 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Trre6g01418 436 Gene3D Phosphorylase Kinase; domain 1 64 155 - -
Trre6g01418 436 MobiDBLite consensus disorder prediction 392 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01418 Trre-Chr6 11360364 11362819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01418 61 361 Glycoside Hydrolase AT3G07070 70.100 3.08e-160 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre6g01418 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01418 - - gmx:100790474 634.409