Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01416 ATGAAGATTCAGACACAAGTGATTCCCCTTGCGCTACAAGGAAAAGAAGATGTGTTTGCAATTTCCCCACCGCGTTCTGGTAAGTTCGGGGCTTTTCTTCTTCCTATATTGCATACTCTCTTAGAAACCGGACCGAACCTAAACACTTTCTTTGCTTGTGTGCTGTCTCCTAAATGGGAGCTTGCTTGTCAAATTGCTGAAGGATTTACTGGTCTAGGATCTCGATTTGGTGTCAAGTGTGCTACCCTTGCTGAATCGTTCGACATGGCAAATCAAGCCTACCAGATTTCACAGCAACCTCATATTATTGTTGCGACCCCTGGAGAAATCTTAAATAACCTAAGACACACCCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACCTGCTGTTGAATGATCACTCTGAGCAACAACTATGTGATATTTCTGAAATGATTCCTACTGAGCGGACAACATATCTTTTTTCATCTACATTGACAGAGAAGGTGCATACAATCCAAAGTGTGTGTTTAAGGAATCCTGTGAAGTGTAACATATTTCACCCGGAGGGATGTATAATTTTAAGCATCTTTCATGGGAAGGAGCTGTCTTCTATTGTGGACACACTGCGGCAGCAACGGTGTTCTATGCAAGCAAGCCATAAGGATTGCTACCTTGCATACACTCTCTCTGAAATGATGGGAAGAAAATCAATGGTATGCACTAATAGTTGTGGTACCACGCTTCTTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGAGCTGTCCCGATTATTATTTTTATGACTCAGGAAAAGAAACGTGAATCCTTGAATGCGTTCAAGTCCGGGGAGTACAGTATTCTCCTTTGTAGTGACGAAGCTAGTAGGGGACTAGATATTCCAGCGGTAGATATGGATTATATGTACCGCGTGGGATGGACTACTCATGCTGATGCTGCCATTTTCTTCGTGAGCCCACGTGAAGTGAGACAATTCAATATGATAGAGAGGCATATAGGCATTGCTTTGCCAGTGTATCCTGCACCATCTGAGGACGTTTTACTTTTGGGAAGGCGTGTTAGAGAGGCCGAAAAATTTGCACAAAAGGAAATGAAAGAATTCGGTTGGAAGAGCGGAGGATACTTGGATCAGCAGGAAGTCGATAAGATGCAATGGATTGGTCAAAGAATCATGTGA 1203 0.4248 MKIQTQVIPLALQGKEDVFAISPPRSGKFGAFLLPILHTLLETGPNLNTFFACVLSPKWELACQIAEGFTGLGSRFGVKCATLAESFDMANQAYQISQQPHIIVATPGEILNNLRHTQGFSLALGRLKYLVIDDAHLLLNDHSEQQLCDISEMIPTERTTYLFSSTLTEKVHTIQSVCLRNPVKCNIFHPEGCIILSIFHGKELSSIVDTLRQQRCSMQASHKDCYLAYTLSEMMGRKSMVCTNSCGTTLLLALILKNLGFRAVPIIIFMTQEKKRESLNAFKSGEYSILLCSDEASRGLDIPAVDMDYMYRVGWTTHADAAIFFVSPREVRQFNMIERHIGIALPVYPAPSEDVLLLGRRVREAEKFAQKEMKEFGWKSGGYLDQQEVDKMQWIGQRIM 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01416 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 349 IPR027417 -
Trre6g01416 400 Pfam DEAD/DEAH box helicase 2 173 IPR011545 GO:0003676|GO:0005524
Trre6g01416 400 PANTHER RNA HELICASE 2 361 - -
Trre6g01416 400 SMART ultradead3 1 199 IPR014001 -
Trre6g01416 400 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 185 IPR014001 -
Trre6g01416 400 Gene3D - 1 188 IPR027417 -
Trre6g01416 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 185 IPR027417 -
Trre6g01416 400 Gene3D - 205 357 IPR027417 -
Trre6g01416 400 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 390 IPR001650 -
Trre6g01416 400 Pfam Helicase conserved C-terminal domain 227 316 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01416 Trre-Chr6 11286580 11292150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01416 17 356 Eukaryotic Initiation Factors Gene Family AT1G72730 22.881 1.13e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01416 K14777 - gmx:100775796 356.681