Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01402 ATGAAGTCATTTAGGGATCTGTCTCCTAAATGGGAGCTTGCTTGTCAAATTGCTGAAGGATTTACTGGTCTAGGATCTCGATTTGGTGTCAAGTGTGCTACCCTTGCTGAATCGTTCGACATGGCAAATCAAGCCTACCAGATTTCACAGAAACCTCATATTATTGTTGCGACCCCTGGAGAAATCTTGAATAACCTAAGACACACTCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACCTGCTGTTGAATGATCACTCTGAGCAACAACTATGTGATATTTCAGAAATGATTCCTACTGAGCCGACAACATTTCTTTTTTCATCTACATTGACAGAGAAGGTGCATACAATCCAAAGTATGTGTTTAAGGAATCCTGTGAAGATTGACTTATCTTCAAAATCTTCTATTGTGGACACACTGAGGCAGCAACAGTGTTCTATGCAAGCAGCAAGCCATAAGGATTGCTACCTTGCATACACTCTCTCTGAAATGATGGGAAGAAAATCAATGGTATGCACTAATAGTTGTGGTACCACGCTTCTTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGAGCTGTCCCGATTATTATTTTTATGACTCAGGAAAAGAAACGTGAATCCTTGAATGCGTTCAAGTCCGGGGAGTACAGTATTCTCCTTTGTAGTGACGAAGCTAGTAGGGGACTAGATATTCCTGCGGTAGATATGGTGATTAACTATGACATTCCTATGTGTCCAGACGATTATATGTACCGCGTGGGATGGACTACTCATGCTGATGCTGCCATTTTCTTTGTGAGCCCACGTGAAGTGAGACAATTCAATATGATAGAGAGGCATATAGGCATTGCTTTGCCAGTGTATCCTGCACCACGTGAGGACGTTTTACTTTTGGGAAGGGGTGTTAGAGAGGCCGAAGGATTTGCACAAAAGGAAATGAAAGAATTCGGTTGGAAGAGCGGAGGATACTTGGATCAGCAGGAAGTACTACACTAA 1026 0.4172 MKSFRDLSPKWELACQIAEGFTGLGSRFGVKCATLAESFDMANQAYQISQKPHIIVATPGEILNNLRHTQGFSLALGRLKYLVIDDAHLLLNDHSEQQLCDISEMIPTEPTTFLFSSTLTEKVHTIQSMCLRNPVKIDLSSKSSIVDTLRQQQCSMQAASHKDCYLAYTLSEMMGRKSMVCTNSCGTTLLLALILKNLGFRAVPIIIFMTQEKKRESLNAFKSGEYSILLCSDEASRGLDIPAVDMVINYDIPMCPDDYMYRVGWTTHADAAIFFVSPREVRQFNMIERHIGIALPVYPAPREDVLLLGRGVREAEGFAQKEMKEFGWKSGGYLDQQEVLH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01402 341 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 165 306 IPR001650 -
Trre6g01402 341 Pfam Helicase conserved C-terminal domain 166 265 IPR001650 -
Trre6g01402 341 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 298 - -
Trre6g01402 341 Gene3D - 7 146 IPR027417 -
Trre6g01402 341 SMART helicmild6 189 264 IPR001650 -
Trre6g01402 341 Pfam DEAD/DEAH box helicase 8 125 IPR011545 GO:0003676|GO:0005524
Trre6g01402 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 287 IPR027417 -
Trre6g01402 341 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 137 IPR014001 -
Trre6g01402 341 Gene3D - 147 300 IPR027417 -
Trre6g01402 341 CDD SF2_C_DEAD 161 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01402 Trre-Chr6 11123569 11127929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01402 7 306 Eukaryotic Initiation Factors Gene Family AT1G72730 23.762 4.83e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01402 K14777 - gmx:100775796 326.635