Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01378 ATGGTTGCTTTCACAAATTTTTCAGGAAATGCTGTTTTAGGCAAATTCATAATGGCATATTGGCATTCTTGTATCGGAAGGAAGAATGGTGAACGTGTAGAAACCCCAAATTACCCTTCTATGCTAGTAAAAGACAGTTCTGAACTTTTGTTTGGTAAAAGTAAATGTATTATTACTAATAAAAGATGGTTCTGCAGAAATGCTGCTTCTCTCTCTTTCTCTGCCCTCGCCACAGAAACCTCCACCACCGCCGACAGAAAAGGTCGCCGTCGTTCCTCGTGCCGTCGTCGACTCATGATGGTGTTGTCTGCTTTCTTGCTTGCAGAGAAGGAGAAGAACTGTAGAACATGTATTGTGCTTCCCCTGCAAGAGTATGCCGAGTTGAAGACATGTTTGAGTCATGTTCCTGAAGTTTCCAACAAAGAAGAAACTGCTGGTGGGGTATTGGAGAATTGGCCACAGAGACTTGAGTTTGTTTCATATATGGAAGGAATTCCAAGCAAAGCTAAAAATTTACCGATGAATTTGTTATTAGGAAAGCTGTATCGAATTTCACATGGCCGAGCTGTTGTTGCTATTTACAAAGAATGCCTAAGGCTGCAATATCAGCATGGAGTTCGACTGTCATCCTTCTTTCTGGAAAACAAGGGTCCCATAATTGTCGTCGAATATATTGTTGGAGGTTATTGTATTATGAGGTTGGATAATATAGAAGAAGCTAGCAAGGATACACCTGGCAGAAGTTTCTATTATGCAATGGAGCCTCTTCGCCACATGTGTCTTTTTTTGCAGTGGTCGCTGAACACCATGGAGATAGCGCTATTCCCTTCAGACGTTTCTGTCGCGGTGTTGGTAGGACTGCACAAGCTAAGAATAGACATTCCAATGGGCAAGAATTCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTGTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGACGCCGTACCTACAGGGCACATGGAAGAATCAATCATATCCTACATGTCATCTCCATGCCTCATTGA 1050 0.4219 MVAFTNFSGNAVLGKFIMAYWHSCIGRKNGERVETPNYPSMLVKDSSELLFGKSKCIITNKRWFCRNAASLSFSALATETSTTADRKGRRRSSCRRRLMMVLSAFLLAEKEKNCRTCIVLPLQEYAELKTCLSHVPEVSNKEETAGGVLENWPQRLEFVSYMEGIPSKAKNLPMNLLLGKLYRISHGRAVVAIYKECLRLQYQHGVRLSSFFLENKGPIIVVEYIVGGYCIMRLDNIEEASKDTPGRSFYYAMEPLRHMCLFLQWSLNTMEIALFPSDVSVAVLVGLHKLRIDIPMGKNSESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINHILHVISMPH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01378 349 PANTHER 60S RIBOSOMAL PROTEIN L17 296 340 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre6g01378 349 Gene3D Ribosomal protein L22/L17 294 346 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre6g01378 349 SUPERFAMILY Ribosomal protein L22 298 343 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre6g01378 349 Pfam Ribosomal protein L22p/L17e 298 343 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01378 Trre-Chr6 10839818 10844229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01378 298 339 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.476 1.25e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01378 K02880 - egr:104415686 85.5001