Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01377 ATGAAGTCATTTAGGGATCTGGGTTTATCTTTTGAATTGTTGGAAACTTGTGACAAACAACTTTTTTGGTATCATCCGACGAAGATTCAGACACAAGTGATTCCCCTTGCGCTACAAGGAAAAGAAGATGTGTTTGCAATTTCCCCACCGCGTTCTGGTAAGTTCGGGGCTTTTATTCTTCCTATATTGCATACTCTCTTAGAAACCGGACCGAACCTAAACACTTTCTTTGCTTGTGTGCTGTTTCCTAAATGGGAGCTTGCTTGTCAAATTGCTGAAGGATTTACTGGTCTAGGATCTCGATTTGGTGTCAAGTGTGCTACCCTTGCTGAATCGTGCGACATGGCAAATCAAGCCTACCAGATTTCACAGCAACCTCATATTATTGTTGGGACCCCTGGAGAAATCTTAAATAACCTAAGACACACCCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACCTGCTGTTGAATGATCACTCTGAGCAACAACTATGTGATATTTCAGAAATGATTCCTACTGAGCCGACAACATTTCTTTTTTCATCTACATTGACAGAGAAGGTGCATACAATCCAAAGTGTGTGTTTAAGGAATCCTGTGAAGATTGACTTATCTTCAAAATCTTCTATTGTGGACACACTGCGGCAGCAACGGTGTTCTATGCAAGCAAGCCATAAGGATTGCTACCTTGCATACACTCTCTCTGAAATGATGGGAAGAAAATCAATGGTATGCACTAATAGTTGTGGTACCACGCTTCTTCTGGCTTTGATTCTTAAGAATCTTGGTTTCAGAGCTGTCCCGATTATTATTTTTATGACTCAGGAAAAGAAACGTGAATCCTTGAATGCGTTCAAGTCCGGGGAGTACAGTATTCTCCTTTGTAGTGACGAAGCTAGTAGGGGACTAGATATTCCAGCGGTAGATATGGTGATTAACTATGACATTCCTATGGATCCAGACGATTATATGTACCGCGTGGGATGGACTACTCATGCTGATGCTGCCATTTTCTTCGTGAGCCCACGTGAAGTGAGACAATTCAATATGATAGAGAGGCATATAGGCATTGCTTTGCCAGTGTATCCTGCACCATCTGAGGACGTTTTACTTTTGGGAAGGCGTGTTAGAGAGGCCGAAAAATTTGCACAAAAGGAAATGAAAGAATTCGGTTGGAAGAGCGGAGGATACTTGGATCAGCAGGAAGTACTACACTGA 1245 0.4185 MKSFRDLGLSFELLETCDKQLFWYHPTKIQTQVIPLALQGKEDVFAISPPRSGKFGAFILPILHTLLETGPNLNTFFACVLFPKWELACQIAEGFTGLGSRFGVKCATLAESCDMANQAYQISQQPHIIVGTPGEILNNLRHTQGFSLALGRLKYLVIDDAHLLLNDHSEQQLCDISEMIPTEPTTFLFSSTLTEKVHTIQSVCLRNPVKIDLSSKSSIVDTLRQQRCSMQASHKDCYLAYTLSEMMGRKSMVCTNSCGTTLLLALILKNLGFRAVPIIIFMTQEKKRESLNAFKSGEYSILLCSDEASRGLDIPAVDMVINYDIPMDPDDYMYRVGWTTHADAAIFFVSPREVRQFNMIERHIGIALPVYPAPSEDVLLLGRRVREAEKFAQKEMKEFGWKSGGYLDQQEVLH 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01377 414 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 379 IPR001650 -
Trre6g01377 414 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 211 IPR014001 -
Trre6g01377 414 CDD SF2_C_DEAD 234 337 - -
Trre6g01377 414 Pfam Helicase conserved C-terminal domain 239 338 IPR001650 -
Trre6g01377 414 PANTHER RNA HELICASE 2 383 - -
Trre6g01377 414 Gene3D - 1 213 IPR027417 -
Trre6g01377 414 SMART ultradead3 22 226 IPR014001 -
Trre6g01377 414 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 2 31 IPR014014 GO:0003724
Trre6g01377 414 Gene3D - 218 368 IPR027417 -
Trre6g01377 414 Pfam DEAD/DEAH box helicase 27 199 IPR011545 GO:0003676|GO:0005524
Trre6g01377 414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 360 IPR027417 -
Trre6g01377 414 SMART helicmild6 262 337 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01377 Trre-Chr6 10830717 10835327 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01377 23 379 Eukaryotic Initiation Factors Gene Family AT1G72730 24.377 1.74e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01377 K14777 - gmx:100775796 408.683