Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01348 ATGGGTTGTTTTCTAAGTAAAGACAAAGATTCAGAACCAGAACACAACAATGGTTATAGATATGCTGAATCTTCTGGTCTTAGGAACAACAATCATGAACAACAAGTCAACCAAACAAGAACACCACCACATAGTACTTCTTCATATCAACCTCAAATACCATTGAAACCTTCATCTATTTCAGCTCCAAGTCCAAAACCTGTTATTAAACAAGACACAAACACAATCCTAGGAAAAGGTTTTGAAGATGTGAAACAATTCTACACACTTGGTAAAGAATTGGGTAGAGGTCAATTTGGAGTAACATATCTATGTACTGAGAATTCAACAAAATTGCTTTATGCTTGTAAATCAATTTCAAAGAGGAAACTTGTGAGTAAATCTGATAGAGAAGATATAAAAAGAGAGATTCAGATTATGCAACATTTAAGTGGTCAACCAAATATTGTTGAATTTAAAGGAGCTTATGAAGATAAAAATTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGACATTATAGTGAAAAAGCAGCTGCTTCTATATGTAGACAGATTGTTAATGTTGTTCATATTTGTCATTTTATGGGTGTTATGCATAGGGATCTCAAGCCAGAGAATTTCTTGTTGTCTAGTAAAGATGAAAATGCACTTCTTAAAGCAACTGATTTTGGTTTGTCTGTTTTTATTGAAGAAGGAAAGGTGTACCGTGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTTCGTCGCAGATGCGGAAAAGAAATCGATATATGGAGTGCAGGAGTAATACTATATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATATTTGACGCCATATTGGAAGGTCACATTGATTTTGACAGTGATCCGTGGCCTAAAATATCGGACAGCGCCAAGGATCTTGTTCGTAAAATGCTTATACAGGATCCGAAGAAACGCATAACTTCCGCACAGGTTCTAGAGCATCCATGGATTAAGGATGGAAATGCTTCTGATAAGCCAATAGACAGCGCAGTTCTTTCTAGAATGAAGCAATTCAGAGCTATGAATAAGCTAAAGAAACTTGCATTGAAGGTCATTGCTGAGAATATGTCTGAAGAAGAGATCCGAGGTTTGAAGGCGATGTTTACAAATATGGACACAGACAACAGTGGTACAATCACCTATGAAGAACTAAAAGCAGGATTGCAAAGACTTGGCTCAAAGCTATCAGAAGCCGAAGTTAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGATTGCATTGAATTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACCATCTTTACAAGGCCTTCCAATATTTCGATAAAGACAGCAGTGGGTTTATTACAAGAGATGAACTGGAAACTGCCATGAAAGAATATGGTATGGGAGATGACGCCACAATCAAAGAAATTATATCGGAAGTCGATACAATTATATCTGAAGTGGACACAGATCATGATGGTAGAATCAACTATGAAGAATTTTGTGCTATGATGAGGAGTGGAAACCAACAACAAGTTAAGCTATTCTAA 1629 0.3671 MGCFLSKDKDSEPEHNNGYRYAESSGLRNNNHEQQVNQTRTPPHSTSSYQPQIPLKPSSISAPSPKPVIKQDTNTILGKGFEDVKQFYTLGKELGRGQFGVTYLCTENSTKLLYACKSISKRKLVSKSDREDIKREIQIMQHLSGQPNIVEFKGAYEDKNSVHVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFDSDPWPKISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSEEEIRGLKAMFTNMDTDNSGTITYEELKAGLQRLGSKLSEAEVKQLMEAADVDGNGTIDCIEFITATMHRHKLERDDHLYKAFQYFDKDSSGFITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFCAMMRSGNQQQVKLF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01348 542 CDD EFh 467 532 IPR002048 GO:0005509
Trre6g01348 542 CDD STKc_CAMK 87 345 - -
Trre6g01348 542 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Trre6g01348 542 Coils Coil 410 430 - -
Trre6g01348 542 SMART efh_1 464 492 IPR002048 GO:0005509
Trre6g01348 542 SMART efh_1 428 456 IPR002048 GO:0005509
Trre6g01348 542 SMART efh_1 506 534 IPR002048 GO:0005509
Trre6g01348 542 SMART efh_1 392 420 IPR002048 GO:0005509
Trre6g01348 542 MobiDBLite consensus disorder prediction 1 68 - -
Trre6g01348 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 527 - -
Trre6g01348 542 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Trre6g01348 542 MobiDBLite consensus disorder prediction 22 68 - -
Trre6g01348 542 ProSitePatterns EF-hand calcium-binding domain. 515 527 IPR018247 -
Trre6g01348 542 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Trre6g01348 542 FunFam Calcium-dependent protein kinase 1 90 173 - -
Trre6g01348 542 Pfam EF-hand domain pair 463 532 IPR002048 GO:0005509
Trre6g01348 542 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Trre6g01348 542 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Trre6g01348 542 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Trre6g01348 542 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Trre6g01348 542 ProSiteProfiles EF-hand calcium-binding domain profile. 502 537 IPR002048 GO:0005509
Trre6g01348 542 SUPERFAMILY Protein kinase-like (PK-like) 87 366 IPR011009 -
Trre6g01348 542 FunFam Calcium-dependent protein kinase 1 353 535 - -
Trre6g01348 542 Gene3D - 354 538 - -
Trre6g01348 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Trre6g01348 542 Gene3D Phosphorylase Kinase; domain 1 90 173 - -
Trre6g01348 542 FunFam calcium-dependent protein kinase 1 174 353 - -
Trre6g01348 542 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Trre6g01348 542 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01348 542 SUPERFAMILY EF-hand 369 533 IPR011992 -
Trre6g01348 542 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Trre6g01348 542 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01348 542 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01348 Trre-Chr6 10516408 10520508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01348 16 542 EF-hand Containing Proteins AT3G20410 73.849 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre6g01348 Pkinase 1.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01348 K13412 - gmx:547888 925.235