Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01339 ATGTTTTCCACCACTCTCACAAATGGGTTCCCCTCAAAATCCAACCTTTCTCAAAAAACCCGTTTCCCCCAATTCCAAATCCGCTCCGGTATCCGTGAAATCCGAGAACGAATCCACACCGTCAAAACCACCCAAAAAATCACCGAAGCAATGAAACTAGTCGCCGCAGCCAGAGTTCGCCGTGCACAAGAAGCCGTAATCAACGGCCGACCTTTCTCTGAAGCCTTCGCTGAAGTCCTCCAAAACATCAACCAAAATCTCCAAAACGACGACGTTGAAGTCCCTTTAACCGCAGTTCGACCGGTAAAAAACGTTGCCTTAGTTGTCATCACCGGTGACCGTGGCTTATGTGGCGGTTTCAATAATTCCGTTGCGAAAAAAGCCGAAGCAAGAGTTCATGAATTGAAGAAATTAGGTATAGGTTGTGTTGTTATAAGTGTTGGTAAAAAGGGTAATTCTTATTTCAAACGTAGGAGTTTTATTGAAGTTGATAGATTCATTGAAAATTCTGGTTTTCCGACAACAAAAGATGCTCAAATTATTGCTGATGATGTTTTTTCATTGTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTTGTTTATACAAAATTTGTATCTTTAGTTAGGTTTAATCCAGTGATACAAACATTGTTACCATTATCTAAAAAAGGTGAAGTTTTTGATGTTAATGGGAATTGTGTTGATGCAATGGGAGATGAATTTTTTAGGTTAACTTCAAAAGATGGAAAATTAGCATTGAAAAGAGATAATTTTGTTGTGAAAAAGAAGAAAATGAATGATGGGTGTGTTCCACTTATGGAATTTGAACAAGATCCTGCTCAGATTCTTGATGCAATGATGCCGCTTTATTTGAATAGTCAAGTTTTGAAAGCATTGCAAGAATCATTGGCTAGTGAACTTGCTGCTAGAATGGGTGCTATGTCTAATGCAACTGATAATGCTGTTGAGTTGACGAAAGAGCTTTCTGTTGCTTATAATAGAGAAAGACAAGCTAAGATTACTGGTGAGATTTTGGAGATTGTGGCTGGTGCCGAGGCGTTGAAACCGATTGATTGA 1077 0.3872 MFSTTLTNGFPSKSNLSQKTRFPQFQIRSGIREIRERIHTVKTTQKITEAMKLVAAARVRRAQEAVINGRPFSEAFAEVLQNINQNLQNDDVEVPLTAVRPVKNVALVVITGDRGLCGGFNNSVAKKAEARVHELKKLGIGCVVISVGKKGNSYFKRRSFIEVDRFIENSGFPTTKDAQIIADDVFSLFVSEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNCVDAMGDEFFRLTSKDGKLALKRDNFVVKKKKMNDGCVPLMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKELSVAYNRERQAKITGEILEIVAGAEALKPID 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01339 358 FunFam ATP synthase gamma chain, chloroplastic 29 96 - -
Trre6g01339 358 ProSitePatterns ATP synthase gamma subunit signature. 340 353 IPR023632 -
Trre6g01339 358 PANTHER ATP SYNTHASE GAMMA CHAIN 15 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 FunFam ATP synthase gamma chain, chloroplastic 247 354 - -
Trre6g01339 358 Gene3D ATP synthase, gamma subunit, helix hairpin domain 30 96 - -
Trre6g01339 358 Gene3D - 97 222 - -
Trre6g01339 358 Pfam ATP synthase 31 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 NCBIfam ATP synthase F1 subunit gamma 30 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 Gene3D ATP synthase, gamma subunit, helix hairpin domain 253 354 - -
Trre6g01339 358 CDD F1-ATPase_gamma 31 351 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 FunFam ATP synthase gamma chain 95 221 - -
Trre6g01339 358 Hamap ATP synthase gamma chain [atpG]. 28 354 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 PRINTS ATP synthase gamma subunit signature 332 353 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 PRINTS ATP synthase gamma subunit signature 102 121 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 PRINTS ATP synthase gamma subunit signature 301 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 PRINTS ATP synthase gamma subunit signature 195 212 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre6g01339 358 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 32 354 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01339 Trre-Chr6 10408924 10410000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01339 12 355 Primary Pumps ATPases AT1G15700 71.014 2.10e-177 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01339 K02115 - qsu:112000322 466.077