Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01336 ATGGAACACATGAACAATATTGGTAATGGAGTGAGCGATGAAAACGGATTGTTTGGTATGATGGAAAGAGGAGTCGGTGGTGATGGAGAAGGTAGTGGTGGTAGAGGCGGCGGTGACGAGGTGAGTTTGAAAAAGGGTCCTTGGACAACAGCTGAGGATGCAATTTTGATAGATTATGTGACAAAACATGGTGAAGGAAATTGGAATGCAGTTCAAAGGAATACAGGTTTGAACCGTTGTGGGAAGAGTTGTAGGCTTAGATGGGCTAATCATTTGAAGCCTAATTTGAAAAAAGGTGCATTTTCTCCAGATGAAGAGAAACTCATTGTTGAACTTCATGCTCAATTTGGAAATAAATGGGCTAGAATGGCTACTTTGTTGCCTGGGAGAACGGACAATGAAATAAAAAATTACTGGAACACAAGAATTAAACGTCGTCAAAGACTAGGTCTTCCTCTATATTCAGACGAACATGATCATACCAGCACACCGGCTACATCAACAACACCTTCACCATGTGTCACCCCAAATGGATCAAACCCTAACAACATAATAGAAAAATTTGAGTTTATCAATCAAAATCCCCACCAATATCAACAACACCATCACCACCTTCCTTTATCTCCAACATCAACTCATCATCATTCTCCTCTCTCTTCACCACTCCACCATAGACAACAACATTCTTATTCTCCTCAATCTTTCTTAGACACTTCACCTACACCATTGTCATCTTCTTCACCACTCTCCTTCACTTTCCAAAGACCCACACCACTCTTATCATCCCCATTTCGCTTCAAACGCTACCGCTCAACTCCAAACTTCAACCTTCATGTCCCTAATTCCATGTCACAAAATTGCTCATCTTCACTCCATGATCTTTCTTTAACTTCTTATCATGATAGTAATTTCAAGTTCCCAACTCATTACAACTCGAGTTTCCCTCAATACTTTCACACTCCTTTGTTGGAATCCGGTCGAGGAGTTTCTTCTTCGTCTTTACCTTTCTCAACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGACTATCCTCAGAACAAGATATAAATGCTAATAATATTGAGTTCAATAATGATCCTAATTCTTTTCAAAACAATAATAGTGGCTTGATGGGAGATCTTTTAATGGATGCACAAACATTGGCATGCGGACAAAATTCAAAGAAAAGAAGTTACTTGAGCTTAAATGAAGGAAATGATATGTATAATGGATGTCAAAGTTATGATGACTTTCCATTTAGCTCTGTTTATTGGTCTTCTAATTCAGGACAAAAACCGATAGAAGAAGCACCAGACCTAACCAAATTCATGAATGATGACATATCAACAATGCTAAGTGTGATGCCTTCTTCCACAATACAAAACCAGGATTGGAATAACAATGGATCATATCAAGTTTCTAATGTTCAATATTCTAGTGGTGTGAATATGGCCGATGAAAATGTTGTACTCGATAATAAGCCTATAGCTTCATTGTTTCCTCTCACAAACACAACAGACGAAAATAATGAAAATAATGGTTGCTACACTTGGGACAATTTAATTTACTAA 1572 0.3804 MEHMNNIGNGVSDENGLFGMMERGVGGDGEGSGGRGGGDEVSLKKGPWTTAEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLKPNLKKGAFSPDEEKLIVELHAQFGNKWARMATLLPGRTDNEIKNYWNTRIKRRQRLGLPLYSDEHDHTSTPATSTTPSPCVTPNGSNPNNIIEKFEFINQNPHQYQQHHHHLPLSPTSTHHHSPLSSPLHHRQQHSYSPQSFLDTSPTPLSSSSPLSFTFQRPTPLLSSPFRFKRYRSTPNFNLHVPNSMSQNCSSSLHDLSLTSYHDSNFKFPTHYNSSFPQYFHTPLLESGRGVSSSSLPFSTKLELPSNQYSRLSSEQDINANNIEFNNDPNSFQNNNSGLMGDLLMDAQTLACGQNSKKRSYLSLNEGNDMYNGCQSYDDFPFSSVYWSSNSGQKPIEEAPDLTKFMNDDISTMLSVMPSSTIQNQDWNNNGSYQVSNVQYSSGVNMADENVVLDNKPIASLFPLTNTTDENNENNGCYTWDNLIY 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01336 523 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Trre6g01336 523 SUPERFAMILY Homeodomain-like 42 139 IPR009057 -
Trre6g01336 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Trre6g01336 523 MobiDBLite consensus disorder prediction 22 44 - -
Trre6g01336 523 Gene3D - 100 146 - -
Trre6g01336 523 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Trre6g01336 523 SMART sant 97 145 IPR001005 -
Trre6g01336 523 SMART sant 44 94 IPR001005 -
Trre6g01336 523 MobiDBLite consensus disorder prediction 159 179 - -
Trre6g01336 523 Gene3D - 44 97 - -
Trre6g01336 523 FunFam MYB-related transcription factor 44 97 - -
Trre6g01336 523 CDD SANT 47 92 IPR001005 -
Trre6g01336 523 CDD SANT 100 141 IPR001005 -
Trre6g01336 523 FunFam Transcription factor GAMYB 100 146 - -
Trre6g01336 523 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 477 - -
Trre6g01336 523 MobiDBLite consensus disorder prediction 154 179 - -
Trre6g01336 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Trre6g01336 523 MobiDBLite consensus disorder prediction 196 250 - -
Trre6g01336 523 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Trre6g01336 523 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01336 Trre-Chr6 10384773 10387234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01336 25 507 MYB Transcription Factor Family AT4G26930 36.605 2.92e-68 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g01336 Myb_DNA-binding 5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01336 - - lja:Lj6g3v0869180.1 582.408