Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01325 ATGAATAAGATTTTTGTTTGGTATCATCGGTTTGTCGTGTTCTTGTTGCTTACAAGGGTTTCTTTAACCTCATCACTTCCACATACTGATAATGGCCATGTAGATTCAGATTCTGCAAGAAATCTGAATCTGGAGCAGGGTGATGATCATCAAATACATTGCTCCAGGGAAAGAAGTAGAATAGCTTGGAAGATAATTCAAGAGTATTTGACGCCATTTGTGGAGAAAGAAAAATATAATATCTCAAGAAAGTGCAGACTTCACCCTGACAATGATATATATAGAGATCAGGAACAACATAAATCTCATATAGATATAAATGAATGGAAGTGTGGATACTGTAAGAAAACTTTCTATGAAGAGAAGAATCTTGATCAGCATTTTGACAACAGACACTCCAATTTACTTAATGTGAATGAAAGCCGATGCTTAGCAGATATATGTGGAGCACTTCACTGTGACCATGTGATTAATTCCGGATCAAAAAAATCAAAGTGCAATCCTGCTGCTGCAGCAAGAAATAAACATCTGTGTGAGACCTTAGCCGATAGCTGTTTTCCTGTTAGCCATGGTCCTGCAGCGAGCCGGCTTCATGAATTCTTCTTGCACCAATTCTGTAATGCTCACAGCTGCACGGGAAGTAAGCCTTTCTCTAGAGGACGCAGGAAAAAGACAAATGTGTTCTACATAGTTGCCTCCATTTTTCTTGTGACACTGCTGTTACTTTACTACCTCTACATGTATTTGTATCAGAGAGGATTGAAAAGGGAAACTCAAATGCTGAAGCATATATCACAAGCCGGTCGAAAAAAGAAGCCATATTAA 825 0.3842 MNKIFVWYHRFVVFLLLTRVSLTSSLPHTDNGHVDSDSARNLNLEQGDDHQIHCSRERSRIAWKIIQEYLTPFVEKEKYNISRKCRLHPDNDIYRDQEQHKSHIDINEWKCGYCKKTFYEEKNLDQHFDNRHSNLLNVNESRCLADICGALHCDHVINSGSKKSKCNPAAAARNKHLCETLADSCFPVSHGPAASRLHEFFLHQFCNAHSCTGSKPFSRGRRKKTNVFYIVASIFLVTLLLLYYLYMYLYQRGLKRETQMLKHISQAGRKKKPY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01325 274 SUPERFAMILY Expressed protein At2g23090/F21P24.15 99 134 - -
Trre6g01325 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 134 IPR013087 -
Trre6g01325 274 ProSitePatterns Zinc finger C2H2 type domain signature. 111 132 IPR013087 -
Trre6g01325 274 PANTHER ZINC FINGER PROTEIN-RELATED 12 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01325 Trre-Chr6 10328299 10332061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01325 32 273 C2H2 Transcription Factor Family AT5G63280 60.408 2.26e-106 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g01325 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01325 - - lang:109338698 436.032