Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01323 ATGAACACTGATTCGAATCCGGAGCAATTATCAGTTGCATTTTCTAATGGTGCTCAATTATCAGTTGCCATTGCTAATGGTGCTATGAACTTGAATGATGCAATTCGTCAACATTTTGATCGAGTGCGAGAAGCTAATGTTGCTACATTGTATAAGAGCAAGACATCAGAGAAAAAGAATAATGTTGAAAAGTGTTGTGATGACAGTGATGAAGGAGGTTTCTATGATTGTAATATTTGTTTAGATTTGGCTAAGGATCCTGTTGTGACTCTTTGTGGTCATTTGTTTTGTTGGCCATGTTTGTATAGATGGTTGTATTTAAGATCTTCTGGAACCAAAGATTGTCCTGTTTGCAAGGAACAAGTTACTGATAAGAATGTTATTCCTATATATGGTGTCCGGAATAATGAAGATGTTCGTAATGAGGATAATTCGAGCTCTGCTACTCGTAAAATCCCTTCCAGACCTAATGCAAGGCATGCATGTCTCGAGGGATCTTGA 501 0.3752 MNTDSNPEQLSVAFSNGAQLSVAIANGAMNLNDAIRQHFDRVREANVATLYKSKTSEKKNNVEKCCDDSDEGGFYDCNICLDLAKDPVVTLCGHLFCWPCLYRWLYLRSSGTKDCPVCKEQVTDKNVIPIYGVRNNEDVRNEDNSSSATRKIPSRPNARHACLEGS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01323 166 ProSitePatterns Zinc finger RING-type signature. 92 101 IPR017907 -
Trre6g01323 166 ProSiteProfiles Zinc finger RING-type profile. 77 119 IPR001841 -
Trre6g01323 166 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 53 159 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre6g01323 166 SMART ring_2 77 118 IPR001841 -
Trre6g01323 166 Pfam Zinc finger, C3HC4 type (RING finger) 77 118 - -
Trre6g01323 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 154 IPR013083 -
Trre6g01323 166 SUPERFAMILY RING/U-box 74 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01323 Trre-Chr6 10312825 10313325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01323 57 159 C3H Transcription Factor Family AT3G58030 53.398 4.79e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01323 K10666 - tpra:123922773 161.384