Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01310 ATGAACTCTGCATTCGGTGCTGAAACTGAAAATCATCCTCCTCCTCCTTCTCTCGCTGCTGCGTCCTCTCCATCTTCTTCTGCTTCCGACAACAACGATCGTAACATGGCTTCTTCTGAACAACTCGTTCTCGAACTCAGCAACCCTGAGCTCCGTGAAAATGCTCTTCTCGAACTCTCCAAGAAGAGAGAGCAATTTCAAGATCTTGCTCCATTGCTATGGAATTCATTTGGCACTATTGCAGCACTTTTGCAGGAAATAGTGTCAATATACCCTGTATTGTCACCTCCCAATCTCAATCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCTTCTCATCCTGATACAAGGATGTTATTCCTGAATGCTCATATTCCGCTGTATCTGTATCCCTTCCTGAACACCACAAGTAAGACAAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCATTGGTGAAGGTTGATGATACCGAGGTTATTAGTTTTCTGCTTTCAACTGAAATAATTCCCCTGTGCCTGCGTACCATGGAAATGGGGAGTGAGCTCTCCAAAACTGTCGCGACATTTATTGTTCAGAAGATTCTGTTGGACGATCTGGGCTTGGATTACATTTGTACCACCGCTGAGCGCTTTTTCGCTGTAGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAACCTTAGGGCCTGTGACGCATTAAGAAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTTAGCAGCTGCCTTCGTGAGGACCCCACAACTAGGAAATGGCTGCAACAATTGCTTCACAATGTTGGAGGGAATCGGGTTCCTGCATTACAAGGCGGAGGAGGCTTCGATCATCTAATGGTGAATTGA 963 0.459 MNSAFGAETENHPPPPSLAAASSPSSSASDNNDRNMASSEQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLNPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDLGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNLRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLLHNVGGNRVPALQGGGGFDHLMVN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01310 320 MobiDBLite consensus disorder prediction 21 39 - -
Trre6g01310 320 FunFam Cell differentiation protein RCD1 32 303 - -
Trre6g01310 320 SUPERFAMILY ARM repeat 44 267 IPR016024 -
Trre6g01310 320 MobiDBLite consensus disorder prediction 1 39 - -
Trre6g01310 320 Gene3D - 31 301 IPR011989 -
Trre6g01310 320 PANTHER UNCHARACTERIZED 31 304 IPR007216 GO:0006402|GO:0030014
Trre6g01310 320 Pfam Cell differentiation family, Rcd1-like 42 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01310 Trre-Chr6 10174634 10180661 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre6g01310 Rcd1 6.3e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01310 K12606 - gmx:100792784 548.125