Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01309 ATGGCTAATTTACCCCAATCTGGTTCCATTTCCATGAACTCTGCATTCGGTGCTGAAACTGAAAATCATCCTCCTCCTCCTTCTCTCGCTGCTGCGTCCTCTCCATCTTCTTCTGCTTCCGACAACAACGATCGTAACATGGCTTCTTCTGAACAACTCGTTCTCGAACTCAGCAACCCTGAGCTCCGTGAAAATGCTCTTCTCGAACTCTCCAAGAAGAGAGAGCAATTTCAAGATCTTGCTCCATTGCTATGGAATTCATTTGGCACTATTGCAGCACTTTTGCAGGAAATAGTGTCAATATACCCTGTATTGTCACCTCCCAATCTCAATCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGTGTGGCTTCTCATCCTGATACAAGGATGTTATTCCTGAATGCTCATATTCCGCTGTATCTGTATCCCTTCCTGAACACCACAAGTAAGACAAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCATTGGTGAAGGTTGATGATACCGAGGTTATTAGTTTTCTGCTTTCAACTGAAATAATTCCCCTGTGCCTGCGTACCATGGAAATGGGGAGTGAGCTCTCCAAAACTGTCGCGACATTTATTGTTCAGAAGATTCTGTTGGACGATCTGGGCTTGGATTACATTTGTACCACCGCTGAGCGCTTTTTCGCTGTAGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAACCTTAGGGCCTGTGACGCATTAAGAAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTTAGCAGCTGCCTTCGTGAGGACCCCACAACTAGGAAATGGCTGCAACAATTGCTTCACAATGTTGGAGGGAATCGGGTTCCTGCATTACAAGGCGGAGGAGGCTTCGATCATCTAATGGTGAATTGA 996 0.4578 MANLPQSGSISMNSAFGAETENHPPPPSLAAASSPSSSASDNNDRNMASSEQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLNPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDLGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNLRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLLHNVGGNRVPALQGGGGFDHLMVN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01309 331 Gene3D - 42 312 IPR011989 -
Trre6g01309 331 PANTHER UNCHARACTERIZED 41 315 IPR007216 GO:0006402|GO:0030014
Trre6g01309 331 Pfam Cell differentiation family, Rcd1-like 53 311 - -
Trre6g01309 331 MobiDBLite consensus disorder prediction 1 18 - -
Trre6g01309 331 FunFam Cell differentiation protein RCD1 43 314 - -
Trre6g01309 331 MobiDBLite consensus disorder prediction 1 46 - -
Trre6g01309 331 MobiDBLite consensus disorder prediction 32 46 - -
Trre6g01309 331 SUPERFAMILY ARM repeat 56 278 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01309 Trre-Chr6 10174601 10180661 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre6g01309 Rcd1 7e-130 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01309 K12606 - pop:7483613 556.599