Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01306 ATGGCAGATGTGGTTGTGAATATTATTGTGACCGTTGCAACTGCTTTGGCAAGTCCTATCCATCGACAAGTAAAATACCTTTTTCGTGCTAATAAAGTGGTCGATGATCTTGAGGATGCAAGGAAGGCGCTGACAGAAGAAAGAGACAATGTGAAGACTCGTATTGAACAAGCTGTGAAGAAAACTGAAGTAATTGAAACATCAGTGGTCAAATGGGTGAATGATGTGGAAATTCTCCTGAAAGAGGTGGATGATCTTGTGCAAAGGACGAAGACAGACATTAATTGCTTTCAAGGATGGTTTCCAATGCGTGGACGGTATCTTTTCTGCAAGAAAATGATGAAGAAGATAAAGGCAATGGGAAAATTCATAGGCACAAGCAAAGATATTCAACCATTTTCTCATCTTGCTCCACTGCGAGGTATTCCAATTGCATCTGAAGACTTCATTTATTTTGCATCAACACAAAAGGCTTATGATGAACTCTTTGATGCACTCGAGGATGACTCCTTCCATATGATAGGATTGTATGGAGCTGGTGGATGTGGAAAAACAACTCTTGCAAGAGAGGTTGGCAAGAAGGCTGACGAACAGAAAATGTTTGATATGGTTATATCAATCACTGTGTCTCAAAGACCAAATATTAGTGGCATTCTTGGAAAAATTGCAGATATGTTAAACTTCAGACTGGAGGAAGAAACTGTAGAGGGAAGAACTGAACGTTTATGGAGGCGTTTGGAACAGGAAAAAGATAATCGAATTCTTATCATAGTAGACGATCTATGGAGTCAGTTTAATATGATGGATATTGGGATTTGCCATGTTAATAGACACACATGGAAAATCCTTGTAGTCACTCATAACGAGGGTATCTGTACTTTAATGGACTGTCAAAAGATGATTCATTTGAGGCACTTGTCTGAAGATGAATCTTGGACTTTGTTCCGAAAGCTTGCCAAAATTGATGACAACTTCTGCGAGTTATTAGATGGTGTGCCACAGAAAATTTGCGATGAATGTAAGGGAGTTCTCATAGCAATCAAAACTATGGCATCTTCCTTAAAAGGAAAGCATCATACTGATTGGAAGTCAACATTTGCTAAGCTGGTTGATTCAAAAGCATTTGATGATCATGAAGAAGGAGAGAGGAATGCTTTAAATTGTATTAAATTAAGCTATGATTGTTTACAAAATACAGAAGCAGAGCTGCTCTTTCTGATGTGTTGTATGTTTCCACAAGACTATCACATTCCAATAGAAGATTTGACGAGATATGCACTTGGTGTACTTAGTACATACTCATTTCAATTACTGAGGAGCTTGGTCGAAGCATGCATAAACAGACTTTTGGAGTCAAGTATGCTGATGCGTGGTTCCGTGAAGATGCATAATATGGTTCGCGAAGCAGCCTTATGGATTGCAAATAGATCAGATAATTGCAAAATCTTGGTAAATGTTGACAACCCACTTGGCAGTGTGGCAGAAGATAACAATATAAGAGATTGTTTTGCACTATCTTCATGGTGGTATAATGAAAGTCCCTCTTTTTGTGAATTGCATGCTCCAAATCTTAAAATTCTATTGGTAAATATAAGTGCTCATACTTCATTGAATTCCTTGGATTTATCACCATTAACATTTGAAGGAATACAAGGGCTTCAGGTATTCTCTCTAACCATCAATTACAAAATAGTACCAATATCATTTCCTCAATCAATCAAACTGTTGACAAATGTTCGAACTCTGCGCTTAAATGGATTGGAACTTGGTGACATTTCTTTCATAGCAAGCTTAACAACACTGGAGGTTCTTGACTTGCGACGCTGTGACTTCAAGGAACTTCCTAATGAATTAAGAAACCTCAAAAGCCTGAAGCTGATAGATTTGTCAGATTGTTGTATTTATGGAAACAACTATAAGGGGGAAATAGGAAAATGTTCACAGCTAGAGGAGTTATATGCTTCAAAATGCTACTCAGATGAGTATGTTCATGAGATCATTCTGGATATTGGTATTCTTCTAAATCTACAAAGGTTTGTATTTGGTGAACCAATCATTCCAGAAAGCACTAGAGCCCTTCGAGTATATGATTTTAATATCTCAAAGTTGAGGGAATCCAACAAGAATATTCTGCAAATAGCTGAAACTATTTCTTTGAGTGGTCTCGATGGAGGATGTAAAAGTATCGTCCCCGATATGGTTGGATTTGTGGGAGGCATGAATAATTTATCTACTCTCTACCTTCAATATTGTGGAGAGATAGAATGTATCTTCGATACAACCTGTGATTTCAAGGAAGATGATTTGATTCCCAGATTGGTTGAGTTAAGGCTTAAGTCTATGGATAACATGACAGAACTGTGTCATGGTCCACCTCTGCAAATTTGGAGTCTCCAATGTCTTGAGAGTTTAACATTGAGTGATTGTGAAGAATTGAAATATTTGTTCTCCATGGAAACACATAGAAGCCTACCTGAGTTGATGCACCTTTCCATTTCTAATTGTCAAGAATTGGAACAAATTGTTGCAGAAAATGAAGAACTTGTGGAGCTTCCAAATGCTGAATTGTATTTTCCAAAGCTAAAAGAAATACATGTCTATAACTGCGACAAGTTGAAAAGCCTTTTCCCTCTTTCAATGGTTACAATGCTTCCACAATTAAGCACTCTTCACTTATCAGACGCTACTCAAGTTCAAGAGGTTTTTAGACATAGTGAAGGAGATGGCGTTATGAATGAATTGGAAATTGTTCTTCCGAACTTGACAGAAATAACACTGCTCAATCTACCAAATTTCGTAGATATATGTCATGGTTCTAAGGTAGATGCCGTTAAACTACAAATAATCAGCATATCTAACTGCCCCAAAACCGCTTCAAGCTTAAACAAAATTCAGGATAAGGATCAAATTGAAGAAGCAGCTTATGTGGAAGAACAATTAGAACTCGACTTCCCGTGGCGCAAAGGAAAAACAATAGAAATTGATTTTGCTGTTGATAAGGATGAAACTGAAGAAGGAAAAGCAAAAGAAATTGAAAAAAGAAAAGCAAAGGAACCAAGGAAGGAAAAGCAAAAGAAAAGCAAAGGAAAAGGAAAAGAAATTAATAAAAGAGTTGTTGAGAGCGCAATTTCAGACCAGAACCTTAATATTTCACCTTAG 3159 0.372 MADVVVNIIVTVATALASPIHRQVKYLFRANKVVDDLEDARKALTEERDNVKTRIEQAVKKTEVIETSVVKWVNDVEILLKEVDDLVQRTKTDINCFQGWFPMRGRYLFCKKMMKKIKAMGKFIGTSKDIQPFSHLAPLRGIPIASEDFIYFASTQKAYDELFDALEDDSFHMIGLYGAGGCGKTTLAREVGKKADEQKMFDMVISITVSQRPNISGILGKIADMLNFRLEEETVEGRTERLWRRLEQEKDNRILIIVDDLWSQFNMMDIGICHVNRHTWKILVVTHNEGICTLMDCQKMIHLRHLSEDESWTLFRKLAKIDDNFCELLDGVPQKICDECKGVLIAIKTMASSLKGKHHTDWKSTFAKLVDSKAFDDHEEGERNALNCIKLSYDCLQNTEAELLFLMCCMFPQDYHIPIEDLTRYALGVLSTYSFQLLRSLVEACINRLLESSMLMRGSVKMHNMVREAALWIANRSDNCKILVNVDNPLGSVAEDNNIRDCFALSSWWYNESPSFCELHAPNLKILLVNISAHTSLNSLDLSPLTFEGIQGLQVFSLTINYKIVPISFPQSIKLLTNVRTLRLNGLELGDISFIASLTTLEVLDLRRCDFKELPNELRNLKSLKLIDLSDCCIYGNNYKGEIGKCSQLEELYASKCYSDEYVHEIILDIGILLNLQRFVFGEPIIPESTRALRVYDFNISKLRESNKNILQIAETISLSGLDGGCKSIVPDMVGFVGGMNNLSTLYLQYCGEIECIFDTTCDFKEDDLIPRLVELRLKSMDNMTELCHGPPLQIWSLQCLESLTLSDCEELKYLFSMETHRSLPELMHLSISNCQELEQIVAENEELVELPNAELYFPKLKEIHVYNCDKLKSLFPLSMVTMLPQLSTLHLSDATQVQEVFRHSEGDGVMNELEIVLPNLTEITLLNLPNFVDICHGSKVDAVKLQIISISNCPKTASSLNKIQDKDQIEEAAYVEEQLELDFPWRKGKTIEIDFAVDKDETEEGKAKEIEKRKAKEPRKEKQKKSKGKGKEINKRVVESAISDQNLNISP 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01306 1052 MobiDBLite consensus disorder prediction 1002 1018 - -
Trre6g01306 1052 SUPERFAMILY L domain-like 461 958 - -
Trre6g01306 1052 Gene3D - 135 302 IPR027417 -
Trre6g01306 1052 Gene3D - 305 391 IPR042197 -
Trre6g01306 1052 Gene3D - 392 471 IPR036388 -
Trre6g01306 1052 Gene3D Ribonuclease Inhibitor 494 684 IPR032675 -
Trre6g01306 1052 Coils Coil 27 61 - -
Trre6g01306 1052 Pfam NB-ARC domain 158 393 IPR002182 GO:0043531
Trre6g01306 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 400 IPR027417 -
Trre6g01306 1052 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 22 875 - -
Trre6g01306 1052 MobiDBLite consensus disorder prediction 1002 1052 - -
Trre6g01306 1052 Gene3D Ribonuclease Inhibitor 686 880 IPR032675 -
Trre6g01306 1052 SMART AAA_5 170 306 IPR003593 GO:0016887
Trre6g01306 1052 PRINTS Disease resistance protein signature 173 188 - -
Trre6g01306 1052 PRINTS Disease resistance protein signature 340 354 - -
Trre6g01306 1052 PRINTS Disease resistance protein signature 248 262 - -
Trre6g01306 1052 PRINTS Disease resistance protein signature 619 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01306 Trre-Chr6 10142079 10145977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01306 174 875 WRKY Transcription Factor Family AT5G45050 20.924 2.65e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01306 - - mtr:25488990 1094.72