Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01284 ATGGAAGATGAAGTCATTTACAATGATATATCTATAGGAAACTCTAATGTTGAAGTTCCACATTCTTCTTCTCAAGTCATGTCATTTAATGGAAAACGACTAATTATGGATGAAGTTGATTTCTTTGCTCAGAAGAAAATGAGTCCAGTTCATCATGACCAAAGGATGGAGCATCATCACGTAGATACTAGTAGTACTTTGGATCTTCTCACAAATATTTCTCTTAGCAACAAATCAACAATGGATGATGAAGAATATTCCGAAGCAACGATTAGGAACAAAAATGAGTGTGCTGCGTTGGTAGCTGAATTGCACCAAATGAATGTTGAAAATCAACGTTTGAAAGAGCTGGTTGATAAGCTGAGAATTGATTGCAATGCCCTAGAAGAGCATGTTGTGCAGTTGAAGCAAAAACAGTATAAACAAGAGATTAATGATGAAGCAACAGAAGAGAAGAAGAGGAAAATGGTTGACTTGATGGAGTGTGATAAAAAGATTCAAAAGATTTGCAACAATGGAGTTATACAAGAGAAGAAGATGGAGAGGGATGATAATGAGATTTCACAAGCTATGAAAGCATTTCCAGGGTGGCTCTCAAACAATGTTCCAAGGTTGAATTCTTTCAAGGGTGTTGATGATCAAGGAACTGAATCAATGATTAAAAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAGCTACTATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGAAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGAACTGCTTGTCCAGTTCGGAAGCAAGTACAAAGGTGTGCTGAAGATAGAACTATATTGGTACAAACATATGAAGGACAACATAACCATGCATTACCACCAACAGCAAAAGCAATGGCATCAACAACATCAGCAGCAGCATCACTTCTTCTTTCAGGACCATTAACAAGTGCAGATGGTTTAATTAATCCAACAATCTTAGAAAGTGCATCAATCCCTGGTTCACATAACATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTATCACATTAGATCTCACTGAAGATGCTACTAAAAATTCTTCACAACAAAGTCAATTTAATCTCATTCAACCCATTTTAGCTCAGAAGTTTATGTCATCATTAAATATTTCTGGAATGGAAAATGCTTCATTTGCTGATACTGTTAGTGCTGCTACAGCTGCTATGACTTCTGATCCAAAATTCACAACTGCTCTTGTTGCTGCCATAAGTTCCATCATTGGAAGTAATTCAAATCAAAACAATGATGGTACTACAAATGGTACAAGTGGAGATCAGCAGAAAAAATAA 1347 0.3682 MEDEVIYNDISIGNSNVEVPHSSSQVMSFNGKRLIMDEVDFFAQKKMSPVHHDQRMEHHHVDTSSTLDLLTNISLSNKSTMDDEEYSEATIRNKNECAALVAELHQMNVENQRLKELVDKLRIDCNALEEHVVQLKQKQYKQEINDEATEEKKRKMVDLMECDKKIQKICNNGVIQEKKMERDDNEISQAMKAFPGWLSNNVPRLNSFKGVDDQGTESMIKKARVSVRARSEATMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRTILVQTYEGQHNHALPPTAKAMASTTSAAASLLLSGPLTSADGLINPTILESASIPGSHNMATLSASAPFPTITLDLTEDATKNSSQQSQFNLIQPILAQKFMSSLNISGMENASFADTVSAATAAMTSDPKFTTALVAAISSIIGSNSNQNNDGTTNGTSGDQQKK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01284 448 MobiDBLite consensus disorder prediction 429 448 - -
Trre6g01284 448 Coils Coil 97 138 - -
Trre6g01284 448 Pfam WRKY DNA -binding domain 238 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01284 448 ProSiteProfiles WRKY domain profile. 231 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01284 448 SUPERFAMILY WRKY DNA-binding domain 229 297 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g01284 448 Gene3D WRKY domain 221 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g01284 448 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 71 435 IPR044810 GO:0003700
Trre6g01284 448 SMART WRKY_cls 236 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01284 448 FunFam probable WRKY transcription factor 31 221 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01284 Trre-Chr6 9912699 9917361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01284 33 436 WRKY Transcription Factor Family AT1G62300 41.756 8.58e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g01284 WRKY 2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01284 - - cam:101500503 491.115