Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01283 ATGGCTTTCCCTCCTTACCGTCCATCTCACATCCGTAGCCAAACTTACAACACTCTTGTCCGTATTCTCTCTCATCTCTCTCCTTCCACCGTTCCTACTCAACCCCTCAATGTTCCTGATAATGGCAATGTTGGAATGGGGCAAGAAAACCAAGAAAAGGAGCCTGAGTGCTCTGAGTTAAAAGTTGGTTCGGATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGAAATACACAATGTCCATGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTGAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAACTAATGAACGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCCTTGAACTGTGAGAAACAGAATAGCGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAAGAACATGTTGAATTTCTGCATTCTGGTACCAACACTTCTGAAAGTGTAAGTGAGGTGTTGACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGCTTTCTTGTGTTAGAGTCAACAAAGGAACAAGCTTCCAGTTCGGTAATTAGTACATCATGTATAGAGAATGAAAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTAATAAGGTTGTTGAAGAAACTCACAGTTCTTTAGATCCTGATTCGAATATTGAAGCATTGAATATGGCAAAAGATGGAGGGTTACTGGATTCAACAGTTATGAAAAATAAATCCGAAACAGAAAATGAAGAAAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCCGATATTTTGATTGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATAGATGGAAACACTTTTGATGTGTCTTCCCCGGATGATATCGTTTCAGAACAGATGAAAATGGATGAAATTCAGAAACCTGTGAATTCATTTGGAAACACGATATCTCCTTTCAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTCATGGTAGATTCCAATAGCAATGGACAAGTACAACCTAGGACTATCAATGCCATACCAACAAATTTAACCCAAAATCAAGTCTTGCACAAAGGATTTTTGGAAGAAACTGCTATCAAAGATCACGGGAACTCGTCTGCAGTACAGCAGATGGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGGAAGTGATTGATACCAATAGAAAACGAAAATATGTTCCTGATTCTGAGGAGAAGGAAGATGAAAATAAGCAGATTGTTGATGCCAGCAGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAATTAGAAAGAGGAAGAAGTATAAGAACAGAGAACTAGGTGTTAAAAGGATGAAGTTGATTCCAGTACAAAAACCGAAAATTATTCCAATTTGTCGCCATTATATAAAAGGAAGGTGCCATGAGGGTGACAAGTGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGAAATACTTACGCCTACAAATGCTTGCAAACCAGAGTTGGAGTCTCCTCTTTCATTAGGAAATACAAATTTCAGTACCCCACTGAATAGTCATGGCAATAGTTCTGTCCAGCAAAACCACTCCACCAATTCTAAGGGAATTCATTCTCACACTAATGTAGAACATAAGGTGACAAAGCCAACATCAGCACCCAAAGGAATTAGATTCATAAATGTTGCTAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGTCAGCAATGAGACGTGTGCAGATAAAAGTCAAAATACTGTGGAAGTTCCTAAGAAATTACCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGAAGAAGTTCTATTTGTGGTTTTCAAAGTTCTATTCAATCCACTGCAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAATTTCATCTCTGAATAAGGTTGATTATGGAAAAGCCAGTAACAGAACTGCAGAAAATTTACCACAAACTGCGTTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATAAAATCAAAGTTTCTAAGGAAAGATTCAACCGATGATTCAGTGAGGGATCACGACCATTGTAAATCAGTTCTAGAGGGAAAACAGGCATCCGATAATTCTCAGACTTCAACTATGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2736 0.3969 MAFPPYRPSHIRSQTYNTLVRILSHLSPSTVPTQPLNVPDNGNVGMGQENQEKEPECSELKVGSDVKDPKGPVPLEEIHNVHDTIGSVGDKDKDLSATAMVLDDIEFLMGSEEPSTQTNDFQCEQKLMNELELVVKGIEDPVCDNGLIPLNCEKQNSGSEVDLMDYRVEEHVEFLHSGTNTSESVSEVLTQVQGELNQLASEGFLVLESTKEQASSSVISTSCIENESQQKETELVNPVSPVVVSLPTIQEGEFEKEEQDGNKVVEETHSSLDPDSNIEALNMAKDGGLLDSTVMKNKSETENEEKSDKLICVRNTTNSSDILIEEGDLEEGEISGDFAIDGNTFDVSSPDDIVSEQMKMDEIQKPVNSFGNTISPFNMGLSFQGFPSNLFMVDSNSNGQVQPRTINAIPTNLTQNQVLHKGFLEETAIKDHGNSSAVQQMVDASRKEQSGPGPKKKKNKKEVIDTNRKRKYVPDSEEKEDENKQIVDASRSKRGPGSQEKKIRKRKKYKNRELGVKRMKLIPVQKPKIIPICRHYIKGRCHEGDKCNFSHDTVPSTKSKPCVHFARHSCMKGDDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQEILTPTNACKPELESPLSLGNTNFSTPLNSHGNSSVQQNHSTNSKGIHSHTNVEHKVTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVVSNETCADKSQNTVEVPKKLPAVTPKGINFLSFGRSSICGFQSSIQSTAEGKILKLPQSVNFGLSEHSISSLNKVDYGKASNRTAENLPQTALFSHDILDKNQSMADRIKSKFLRKDSTDDSVRDHDHCKSVLEGKQASDNSQTSTMTSATLLARPFASQQSSDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGASPV 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01283 911 MobiDBLite consensus disorder prediction 820 838 - -
Trre6g01283 911 ProSiteProfiles Zinc finger C3H1-type profile. 586 609 IPR000571 GO:0046872
Trre6g01283 911 MobiDBLite consensus disorder prediction 28 65 - -
Trre6g01283 911 Gene3D - 483 556 - -
Trre6g01283 911 ProSiteProfiles Zinc finger C3H1-type profile. 556 583 IPR000571 GO:0046872
Trre6g01283 911 MobiDBLite consensus disorder prediction 28 48 - -
Trre6g01283 911 MobiDBLite consensus disorder prediction 820 850 - -
Trre6g01283 911 ProSiteProfiles Zinc finger C3H1-type profile. 527 554 IPR000571 GO:0046872
Trre6g01283 911 MobiDBLite consensus disorder prediction 449 497 - -
Trre6g01283 911 MobiDBLite consensus disorder prediction 498 512 - -
Trre6g01283 911 Gene3D - 557 621 - -
Trre6g01283 911 MobiDBLite consensus disorder prediction 635 672 - -
Trre6g01283 911 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 226 909 IPR045124 GO:0003723|GO:0045892
Trre6g01283 911 SUPERFAMILY CCCH zinc finger 528 552 IPR036855 GO:0046872
Trre6g01283 911 MobiDBLite consensus disorder prediction 690 710 - -
Trre6g01283 911 MobiDBLite consensus disorder prediction 635 660 - -
Trre6g01283 911 Pfam CCCH-type zinc finger 531 552 IPR041367 -
Trre6g01283 911 SMART c3hfinal6 556 582 IPR000571 GO:0046872
Trre6g01283 911 SMART c3hfinal6 584 608 IPR000571 GO:0046872
Trre6g01283 911 SMART c3hfinal6 528 553 IPR000571 GO:0046872
Trre6g01283 911 MobiDBLite consensus disorder prediction 434 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01283 Trre-Chr6 9901289 9908290 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g01283 zf-CCCH_4 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01283 - - tpra:123918975 1516.13