Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01282 ATGGCTTTCCCTCCTTACCGTCCATCTCACATCCGTAGCCAAACTTACAACACTCTTGTCCGTATTCTCTCTCATCTCTCTCCTTCCACCGTTCCTACTCAACCCCTCAATGTTCCTGATAATGGCAATGTTGGAATGGGGCAAGAAAACCAAGAAAAGGAGCCTGAGTGCTCTGAGTTAAAAGTTGGTTCGGATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGAAATACACAATGTCCATGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTGAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAACTAATGAACGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCCTTGAACTGTGAGAAACAGAATAGCGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAAGAACATGTTGAATTTCTGCATTCTGGTACCAACACTTCTGAAAGTGTAAGTGAGGTGTTGACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGCTTTCTTGTGTTAGAGTCAACAAAGGAACAAGCTTCCAGTTCGGTAATTAGTACATCATGTATAGAGAATGAAAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTAATAAGGTTGTTGAAGAAACTCACAGTTCTTTAGATCCTGATTCGAATATTGAAGCATTGAATATGGCAAAAGATGGAGGGTTACTGGATTCAACAGTTATGAAAAATAAATCCGAAACAGAAAATGAAGAAAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCCGATATTTTGATTGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATAGATGGAAACACTTTTGATGTGTCTTCCCCGGATGATATCGTTTCAGAACAGATGAAAATGGATGAAATTCAGAAACCTGTGAATTCATTTGGAAACACGATATCTCCTTTCAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTCATGGTAGATTCCAATAGCAATGGACAAGTACAACCTAGGACTATCAATGCCATACCAACAAATTTAACCCAAAATCAAGTCTTGCACAAAGGATTTTTGGAAGAAACTGCTATCAAAGATCACGGGAACTCGTCTGCAGTACAGCAGATGGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGCAGATTGTTGATGCCAGCAGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAATTAGAAAGAGGAAGAAGTATAAGAACAGAGAACTAGGTGTTAAAAGGATGAAGTTGATTCCAGTACAAAAACCGAAAATTATTCCAATTTGTCGCCATTATATAAAAGGAAGGTGCCATGAGGGTGACAAGTGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGAAATACTTACGCCTACAAATGCTTGCAAACCAGAGTTGGAGTCTCCTCTTTCATTAGGAAATACAAATTTCAGTACCCCACTGAATAGTCATGGCAATAGTTCTGTCCAGCAAAACCACTCCACCAATTCTAAGGGAATTCATTCTCACACTAATGTAGAACATAAGGTGACAAAGCCAACATCAGCACCCAAAGGAATTAGATTCATAAATGTTGCTAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGTCAGCAATGAGACGTGTGCAGATAAAAGTCAAAATACTGTGGAAGTTCCTAAGAAATTACCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGAAGAAGTTCTATTTGTGGTTTTCAAAGTTCTATTCAATCCACTGCAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAATTTCATCTCTGAATAAGGTTGATTATGGAAAAGCCAGTAACAGAACTGCAGAAAATTTACCACAAACTGCGTTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATAAAATCAAAGTTTCTAAGGAAAGATTCAACCGATGATTCAGTGAGGGATCACGACCATTGTAAATCAGTTCTAGAGGGAAAACAGGCATCCGATAATTCTCAGACTTCAACTATGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2667 0.3986 MAFPPYRPSHIRSQTYNTLVRILSHLSPSTVPTQPLNVPDNGNVGMGQENQEKEPECSELKVGSDVKDPKGPVPLEEIHNVHDTIGSVGDKDKDLSATAMVLDDIEFLMGSEEPSTQTNDFQCEQKLMNELELVVKGIEDPVCDNGLIPLNCEKQNSGSEVDLMDYRVEEHVEFLHSGTNTSESVSEVLTQVQGELNQLASEGFLVLESTKEQASSSVISTSCIENESQQKETELVNPVSPVVVSLPTIQEGEFEKEEQDGNKVVEETHSSLDPDSNIEALNMAKDGGLLDSTVMKNKSETENEEKSDKLICVRNTTNSSDILIEEGDLEEGEISGDFAIDGNTFDVSSPDDIVSEQMKMDEIQKPVNSFGNTISPFNMGLSFQGFPSNLFMVDSNSNGQVQPRTINAIPTNLTQNQVLHKGFLEETAIKDHGNSSAVQQMVDASRKEQSGPGPKKKKNKKQIVDASRSKRGPGSQEKKIRKRKKYKNRELGVKRMKLIPVQKPKIIPICRHYIKGRCHEGDKCNFSHDTVPSTKSKPCVHFARHSCMKGDDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQEILTPTNACKPELESPLSLGNTNFSTPLNSHGNSSVQQNHSTNSKGIHSHTNVEHKVTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVVSNETCADKSQNTVEVPKKLPAVTPKGINFLSFGRSSICGFQSSIQSTAEGKILKLPQSVNFGLSEHSISSLNKVDYGKASNRTAENLPQTALFSHDILDKNQSMADRIKSKFLRKDSTDDSVRDHDHCKSVLEGKQASDNSQTSTMTSATLLARPFASQQSSDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGASPV 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01282 888 MobiDBLite consensus disorder prediction 667 687 - -
Trre6g01282 888 ProSiteProfiles Zinc finger C3H1-type profile. 504 531 IPR000571 GO:0046872
Trre6g01282 888 MobiDBLite consensus disorder prediction 797 815 - -
Trre6g01282 888 MobiDBLite consensus disorder prediction 28 65 - -
Trre6g01282 888 SUPERFAMILY CCCH zinc finger 505 529 IPR036855 GO:0046872
Trre6g01282 888 MobiDBLite consensus disorder prediction 28 48 - -
Trre6g01282 888 Gene3D - 460 534 - -
Trre6g01282 888 ProSiteProfiles Zinc finger C3H1-type profile. 563 586 IPR000571 GO:0046872
Trre6g01282 888 MobiDBLite consensus disorder prediction 612 649 - -
Trre6g01282 888 MobiDBLite consensus disorder prediction 797 827 - -
Trre6g01282 888 Pfam CCCH-type zinc finger 508 529 IPR041367 -
Trre6g01282 888 Gene3D - 535 597 - -
Trre6g01282 888 MobiDBLite consensus disorder prediction 612 637 - -
Trre6g01282 888 MobiDBLite consensus disorder prediction 434 487 - -
Trre6g01282 888 ProSiteProfiles Zinc finger C3H1-type profile. 533 560 IPR000571 GO:0046872
Trre6g01282 888 SMART c3hfinal6 533 559 IPR000571 GO:0046872
Trre6g01282 888 SMART c3hfinal6 561 585 IPR000571 GO:0046872
Trre6g01282 888 SMART c3hfinal6 505 530 IPR000571 GO:0046872
Trre6g01282 888 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 226 886 IPR045124 GO:0003723|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01282 Trre-Chr6 9901289 9908290 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g01282 zf-CCCH_4 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01282 - - tpra:123918975 1475.3