Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01281 ATGGCTTTCCCTCCTTACCGTCCATCTCACATCCGTAGCCAAACTTACAACACTCTTGTCCGTATTCTCTCTCATCTCTCTCCTTCCACCGTTCCTACTCAACCCCTCAATGTTCCTGATAATGGCAATGTTGGAATGGGGCAAGAAAACCAAGAAAAGGAGCCTGAGTGCTCTGAGTTAAAAGTTGGTTCGGATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGAAATACACAATGTCCATGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTGAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAACTAATGAACGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCCTTGAACTGTGAGAAACAGAATAGCGGTAGTGAAGTTGATTTGATGGATTACCGAGTAGAAGAACATGTTGAATTTCTGCATTCTGGTACCAACACTTCTGAAAGTGTAAGTGAGGTGTTGACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGCTTTCTTGTGTTAGAGTCAACAAAGGAACAAGCTTCCAGTTCGGTAATTAGTACATCATGTATAGAGAATGAAAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTAATAAGGTTGTTGAAGAAACTCACAGTTCTTTAGATCCTGATTCGAATATTGAAGCATTGAATATGGCAAAAGATGGAGGGTTACTGGATTCAACAGTTATGAAAAATAAATCCGAAACAGAAAATGAAGAAAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCCGATATTTTGATTGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATAGATGGAAACACTTTTGATGTGTCTTCCCCGGATGATATCGTTTCAGAACAGATGAAAATGGATGAAATTCAGAAACCTGTGAATTCATTTGGAAACACGATATCTCCTTTCAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTCATGGTAGATTCCAATAGCAATGGACAAGTACAACCTAGGACTATCAATGCCATACCAACAAATTTAACCCAAAATCAAGTCTTGCACAAAGGATTTTTGGAAGAAACTGCTATCAAAGATCACGGGAACTCGTCTGCAGTACAGATGGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGGAAGTGATTGATACCAATAGAAAACGAAAATATGTTCCTGATTCTGAGGAGAAGGAAGATGAAAATAAGCAGATTGTTGATGCCAGCAGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAATTAGAAAGAGGAAGAAGTATAAGAACAGAGAACTAGGTGTTAAAAGGATGAAGTTGATTCCAGTACAAAAACCGAAAATTATTCCAATTTGTCGCCATTATATAAAAGGAAGGTGCCATGAGGGTGACAAGTGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGAAATACTTACGCCTACAAATGCTTGCAAACCAGAGTTGGAGTCTCCTCTTTCATTAGGAAATACAAATTTCAGTACCCCACTGAATAGTCATGGCAATAGTTCTGTCCAGCAAAACCACTCCACCAATTCTAAGGGAATTCATTCTCACACTAATGTAGAACATAAGGTGACAAAGCCAACATCAGCACCCAAAGGAATTAGATTCATAAATGTTGCTAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGTCAGCAATGAGACGTGTGCAGATAAAAGTCAAAATACTGTGGAAGTTCCTAAGAAATTACCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGAAGAAGTTCTATTTGTGGTTTTCAAAGTTCTATTCAATCCACTGCAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAATTTCATCTCTGAATAAGGTTGATTATGGAAAAGCCAGTAACAGAACTGCAGAAAATTTACCACAAACTGCGTTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATAAAATCAAAGTTTCTAAGGAAAGATTCAACCGATGATTCAGTGAGGGATCACGACCATTGTAAATCAGTTCTAGAGGGAAAACAGGCATCCGATAATTCTCAGACTTCAACTATGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2733 0.3966 MAFPPYRPSHIRSQTYNTLVRILSHLSPSTVPTQPLNVPDNGNVGMGQENQEKEPECSELKVGSDVKDPKGPVPLEEIHNVHDTIGSVGDKDKDLSATAMVLDDIEFLMGSEEPSTQTNDFQCEQKLMNELELVVKGIEDPVCDNGLIPLNCEKQNSGSEVDLMDYRVEEHVEFLHSGTNTSESVSEVLTQVQGELNQLASEGFLVLESTKEQASSSVISTSCIENESQQKETELVNPVSPVVVSLPTIQEGEFEKEEQDGNKVVEETHSSLDPDSNIEALNMAKDGGLLDSTVMKNKSETENEEKSDKLICVRNTTNSSDILIEEGDLEEGEISGDFAIDGNTFDVSSPDDIVSEQMKMDEIQKPVNSFGNTISPFNMGLSFQGFPSNLFMVDSNSNGQVQPRTINAIPTNLTQNQVLHKGFLEETAIKDHGNSSAVQMVDASRKEQSGPGPKKKKNKKEVIDTNRKRKYVPDSEEKEDENKQIVDASRSKRGPGSQEKKIRKRKKYKNRELGVKRMKLIPVQKPKIIPICRHYIKGRCHEGDKCNFSHDTVPSTKSKPCVHFARHSCMKGDDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQEILTPTNACKPELESPLSLGNTNFSTPLNSHGNSSVQQNHSTNSKGIHSHTNVEHKVTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVVSNETCADKSQNTVEVPKKLPAVTPKGINFLSFGRSSICGFQSSIQSTAEGKILKLPQSVNFGLSEHSISSLNKVDYGKASNRTAENLPQTALFSHDILDKNQSMADRIKSKFLRKDSTDDSVRDHDHCKSVLEGKQASDNSQTSTMTSATLLARPFASQQSSDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGASPV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01281 910 MobiDBLite consensus disorder prediction 634 671 - -
Trre6g01281 910 MobiDBLite consensus disorder prediction 634 659 - -
Trre6g01281 910 ProSiteProfiles Zinc finger C3H1-type profile. 526 553 IPR000571 GO:0046872
Trre6g01281 910 MobiDBLite consensus disorder prediction 819 849 - -
Trre6g01281 910 MobiDBLite consensus disorder prediction 448 496 - -
Trre6g01281 910 MobiDBLite consensus disorder prediction 28 65 - -
Trre6g01281 910 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 226 908 IPR045124 GO:0003723|GO:0045892
Trre6g01281 910 MobiDBLite consensus disorder prediction 28 48 - -
Trre6g01281 910 Gene3D - 482 555 - -
Trre6g01281 910 MobiDBLite consensus disorder prediction 689 709 - -
Trre6g01281 910 Gene3D - 556 620 - -
Trre6g01281 910 ProSiteProfiles Zinc finger C3H1-type profile. 585 608 IPR000571 GO:0046872
Trre6g01281 910 ProSiteProfiles Zinc finger C3H1-type profile. 555 582 IPR000571 GO:0046872
Trre6g01281 910 SMART c3hfinal6 527 552 IPR000571 GO:0046872
Trre6g01281 910 SMART c3hfinal6 555 581 IPR000571 GO:0046872
Trre6g01281 910 SMART c3hfinal6 583 607 IPR000571 GO:0046872
Trre6g01281 910 SUPERFAMILY CCCH zinc finger 527 551 IPR036855 GO:0046872
Trre6g01281 910 MobiDBLite consensus disorder prediction 430 510 - -
Trre6g01281 910 MobiDBLite consensus disorder prediction 819 837 - -
Trre6g01281 910 Pfam CCCH-type zinc finger 530 551 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01281 Trre-Chr6 9901289 9908290 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g01281 zf-CCCH_4 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01281 - - tpra:123918975 1513.82