Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01270 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTCGAACTTCAATTGCATGAACAAAAAGACTCTCTTTCTGCCATCGATCATGCTCTCCTCATTGATCCAACCAATTCCGAACTCCTTGAGGTTCATGAGGAACTTGTTCAGGCTATTAAGGATGCCGAGGACGGACTTCTTCACCTAAAGCGTTCAAGATTATTATCTGAAGCAGACTCATTGCTGCCTAGTACTAATATTTTTGCTGAAGAAGAGAAAGTGGAACCAATTGATCCTGCAGATGTTGAACCAGAGCGGCTAGAGGAAAAATGCTATTCTGTTGGATCTACATGTAGATTCCGTTACAAAGATGGGCGTTGGTACAATGGTCAAGTGCTGCAATCGGATAATTCAGTGGCAAAGATTTCATTTTTAACTCCTACTTCTGAGAATATGATGATTTGCAAGTTCTTTTTACAACAGCGATGTCGATTTGGTAGTAACTGTCGCCTATCCCATGGAGTTGATGTTCCAATATCCTCCCTTAAGGAATATGTCCCAACAATGTGGAAACCATCCCTTGCAGGGTCAAGCATATGGGCAGTCTCAAATGCAAATCCAGGAATTTGGAGAGAAGCTGAGCTTGAGTCATGGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACGATGGAAGTTCTGTGAAGCTTGGTGCACAAGATATAGTATTATCTGAGTATGCAGATGTGAGTGACATAGATAGTGTAGATAGTGATTCCAGCTCAGAACAATCTGATATCAGCGGCTCAGAGGAAGATGAACCACAGGGTTTAGGATTTATGGATAGTACCAACTTACAGAAAGGTGTTCAAACCGAAACTGCAATATTTGCGAAGTGGGAGAACCATACCAGAGGCATGGCTTCCAAAATGATGGCTAATATGGGTTACCAAGAAGGAATGGGTTTAGGTTTAACTGGACAGGGTATGCTTGATCCCATACCAGTGAAGGTCCTACCACCAAAACAGTCCTTAGATCATGCACTTAAGTCTCATAAAATGGAAGAGAACACCCAGAATAAACGGAAGAAACGTACCAGAGGTGGCAGGAGGAAACGCGAGAAGAAATTTGCTGAAGCAATTCGTGCCGCAAAAGAAGAAGAAGAATCAGCACCAGATGTCTTTGCACTAATAAACAATCAGCTAGCAATGCATGGTGAAGCTTCCAGTGAGGGATCAAAGAAGAAGCAACAAAGTAAAGGTTTAGCAGAAGGTAAAATGGTGGATAGGAAGGTGTTGGTTGCTTATGAGAATGATGTGAAGGATCTGAAAATTCAGGTTCTAAAGTTTGAACAAATGGCCGAAGCAAACAAGAAAGAAAAACCTGTTTACGACGCTGCTATGAAAAAATTAGTCCAAACCCGCAAGGCTTTGGCTGAGGCTGAAGCAGTTCATGCTTCTGCCTCAAATGATGTTGTTAGCAAAGAAAAAGAGAAAAGATGGCTTAAGTTTTAG 1494 0.4203 MGSEEERVLENQLELQLHEQKDSLSAIDHALLIDPTNSELLEVHEELVQAIKDAEDGLLHLKRSRLLSEADSLLPSTNIFAEEEKVEPIDPADVEPERLEEKCYSVGSTCRFRYKDGRWYNGQVLQSDNSVAKISFLTPTSENMMICKFFLQQRCRFGSNCRLSHGVDVPISSLKEYVPTMWKPSLAGSSIWAVSNANPGIWREAELESWDEKAGVGQVVFRDDGSSVKLGAQDIVLSEYADVSDIDSVDSDSSSEQSDISGSEEDEPQGLGFMDSTNLQKGVQTETAIFAKWENHTRGMASKMMANMGYQEGMGLGLTGQGMLDPIPVKVLPPKQSLDHALKSHKMEENTQNKRKKRTRGGRRKREKKFAEAIRAAKEEEESAPDVFALINNQLAMHGEASSEGSKKKQQSKGLAEGKMVDRKVLVAYENDVKDLKIQVLKFEQMAEANKKEKPVYDAAMKKLVQTRKALAEAEAVHASASNDVVSKEKEKRWLKF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01270 497 Gene3D - 106 178 - -
Trre6g01270 497 ProSiteProfiles G-patch domain profile. 297 343 IPR000467 GO:0003676
Trre6g01270 497 MobiDBLite consensus disorder prediction 402 417 - -
Trre6g01270 497 MobiDBLite consensus disorder prediction 341 368 - -
Trre6g01270 497 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Trre6g01270 497 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Trre6g01270 497 Coils Coil 457 491 - -
Trre6g01270 497 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Trre6g01270 497 Coils Coil 426 446 - -
Trre6g01270 497 Pfam G-patch domain 297 339 IPR000467 GO:0003676
Trre6g01270 497 SMART G-patch_5 295 341 IPR000467 GO:0003676
Trre6g01270 497 MobiDBLite consensus disorder prediction 341 355 - -
Trre6g01270 497 MobiDBLite consensus disorder prediction 246 278 - -
Trre6g01270 497 MobiDBLite consensus disorder prediction 398 417 - -
Trre6g01270 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 497 - -
Trre6g01270 497 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01270 Trre-Chr6 9808016 9812431 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g01270 G-patch 9.2e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01270 - - psat:127084863 727.243