Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01264 ATGCAGGAAAGTTCTGCCTACATAGAAGCCTTGGATTTTGAGCCGGAGAACGATGATTTGATGGACGGCGACAGTGTCACTGACGCCGATGCTTCTCTTCATCGTCCTAAGCTCAAATCCGCTATCATCACGTCATCAACTCTCTCCGTTCCCAAAAAGACTAAAGGTCGTGGTTTCCGTCAGGATTACAAGTCCCATCGCTACTCTCCCCTCACTGGTGATTCTGATTTTGATTCTCTCATTGTCGAAGGTGGCCCTGGACCTCAAAAATCCGTTGAAGGATGGGTTATTTTAATAACCGGTGTGCATGGGGAAGCTGACGAGGAAGATTTGCGAGACGCCTTTGGTGATTACGGAGAGATTAAGAACCTTAAATTGATTAATGAGCACCGTGAAGGTTTTGTCAAAGGTGCGCTGATTGAATACGAGCATTCCGAGGAAGCCCGTAATGCAATAGAGAATTTGAATGGATCCGAGTTTCTTACAAAAACCATTTATGTTGATTGGGCTTTTAAAAGTGGATGGATCAACAAGTCGATTAAAAGTAAAAACCCTAGACCACCTCATCAACGCTCGAGGAGTCCTCGAAGGAGATATTGA 600 0.4483 MQESSAYIEALDFEPENDDLMDGDSVTDADASLHRPKLKSAIITSSTLSVPKKTKGRGFRQDYKSHRYSPLTGDSDFDSLIVEGGPGPQKSVEGWVILITGVHGEADEEDLRDAFGDYGEIKNLKLINEHREGFVKGALIEYEHSEEARNAIENLNGSEFLTKTIYVDWAFKSGWINKSIKSKNPRPPHQRSRSPRRRY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01264 199 MobiDBLite consensus disorder prediction 180 199 - -
Trre6g01264 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 172 IPR000504 GO:0003723
Trre6g01264 199 PANTHER RNA-BINDING PROTEIN 8A 8 198 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre6g01264 199 SUPERFAMILY RNA-binding domain, RBD 87 198 IPR035979 GO:0003676
Trre6g01264 199 MobiDBLite consensus disorder prediction 184 199 - -
Trre6g01264 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 165 IPR000504 GO:0003723
Trre6g01264 199 PRINTS RNA binding motif protein 8 family signature 86 100 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre6g01264 199 PRINTS RNA binding motif protein 8 family signature 48 60 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre6g01264 199 PRINTS RNA binding motif protein 8 family signature 141 157 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre6g01264 199 PRINTS RNA binding motif protein 8 family signature 159 171 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Trre6g01264 199 Gene3D - 39 193 IPR012677 -
Trre6g01264 199 SMART rrm1_1 96 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01264 Trre-Chr6 9744930 9745529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01264 60 191 Eukaryotic Initiation Factors Gene Family AT1G34140 26.471 2.96e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01264 K12876 - gmx:100778595 242.662