Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01233 ATGGCTATGTTTGTGCCAAATGAAAATCATTTTACAAAGCTTAATGACATCGATTCTGATAAGGCTTCTTATAATGTTAGAGTTAAAATATTAAGATTGTGGGAAGTTTCTGATTTTAATCGTGCTAACAGTCCTTTTTCTATTGAAATGGTTTTAATGGATTCTGAGGGAGGGAGGATTCATGCAACTATTAAGAAAACATTAATTTACAAATTTAAGGATAGCTTAGTTGAAGGGAATGTTTATGGTTTTGACAATGTTGGAGTTTCAACTAATGGTGGAGCTTACCGCAGTACTCATCATCGTTATAAGTTGAATTTTCAGTTTTCTTCAATGGTACAAAAGCTTTCTAATGTTGATATTAAAGGATCTGGGTTTAACTTTGTACCTATTTCTGAAGTTGTTGGAGGTTCTTATGACACTGATTATTTAGTTGATGTTATTGGCATTTTGACTGGTGTTGGAACTGAGCGTGAAGTCACAAACCAAAATGGAAGCACCACTAAGTTGAATGTGATTGCTTTAGAGGCTGAAGGGCATAAGTTGCAGTGTACTTTGTTTGGACCCTATGTTGATGAGTTGAATGCTTTTATTGGTTCTGGTGACTACAACAATGCTATTGTTGTTCTTCAATTTGCCAAGGCTAAGCCATTTCAAGACAAGATACACATACAAAACTGTTTGAACTGTAGCAAGTTGTACTTTAACCCTAACTGCCCAGAAAGTGCAGTCTTGAGGCAAAGCTTGCCTGAAAGTGTAGAAAATCCTTCTCCAATCACTCTTACTCAAATCCAGATGGAGCCTGTTGTTAGCCCAATGGATGAGTTTGTATTCAACACACCAAGAATCACTTTGCAAGAACTTAAAGATTCTACAACTGAATCACTTCATGTTGTATGTGCTACTGTCAAGAAAATATTGAATCCAGATTGTTTTTGGTATACTGCCTGTGTTTGTAACAAATCTGTGATACCTGATTCAAACATGTTTTTTTGTGAAAAATGCAACAAGCATGTGGTTAAGGTTTACCCAAGGTATTGTATGAAGGTCAGAGTTATGGACCACACAGATTCTGCCAGTTTTGTGATATTTGACAGAGATGCAGCTTCATTGTTCAACATGAGTTGTGCAGAGATGTTAAATGAAACTCAAAGGAACGGCACTGTTGGAGTTATTCCACCTCAAATTTCAAAGCTTCTTGACATGAATTTGTTGTTCAAGGTTGAGACAAAACCTTCAACAAATCCTAGGTTTGAGCAAACTTTTAGGGTTAGAAAAATTTGCACTGATTCTGCCATCATTAAGACATTCAAGGACAAGTGGGATAATGAAGAGGCATCTATTAGCAAAATAAACAATGAGGTTGGTTCTTTGAGTACTTTGCTGGAAAAAGGAAAACATCTTTTAGCGTGTAGTACAAACAACATCCTATCTCAGGATTCAGCTTCGTTGACTGCGAGTAGTGGCAGCGGAAAGGGAAAGGAAGCAGCAAATCTCAGCAGTCCTGCTCCAATAACTCAAGATTTAATGAAGAAATTTACGTCAACTGTTATCAACCTTGATGATGATTCTGTTTCTGCATTAGATCTAATTAAGACTCAACAAAGTCAGACTTCTGTTCTATCTTGCAAGGATTTAGAGTCATTGAGTGGAAGCAGTATGGAATCTCAACCAAAAGATGTTGAAGTGAATGGAACTCCTGTTATATATTTACTTCAAACCAAGCCTACTGCTGCTGAGGGTAAAGAGATTGAAAAAACTGTTGTAGCTGATGATGAGGTTGTATCAAGTGCAGAAAATGATAATACTGTGGAGAAGGAGTTTGGTGAATTAAGTGGAGCCAAAGTATATGCAAAGGTTTTAGAGGGTACTCCTGTTGAACTTCACCAACCAGTGGAGGCACATGAAGACTTGGCTGTTGTAAACCTTGAGGGTGATTCGCCTCAACATGATAAGTTGTTTAAGACTCCCAAGGCATTAGGATCAAAGGGAGTTAAGGGCAGGAAGTTTGTGAAGAGAGTTTCACCTGATAAAGTTGCAGAGGAAGATAATGCACCAATTAAGCTATTGAAAAGGGTTATTAAACAAGAGAAAATGTGA 2100 0.3724 MAMFVPNENHFTKLNDIDSDKASYNVRVKILRLWEVSDFNRANSPFSIEMVLMDSEGGRIHATIKKTLIYKFKDSLVEGNVYGFDNVGVSTNGGAYRSTHHRYKLNFQFSSMVQKLSNVDIKGSGFNFVPISEVVGGSYDTDYLVDVIGILTGVGTEREVTNQNGSTTKLNVIALEAEGHKLQCTLFGPYVDELNAFIGSGDYNNAIVVLQFAKAKPFQDKIHIQNCLNCSKLYFNPNCPESAVLRQSLPESVENPSPITLTQIQMEPVVSPMDEFVFNTPRITLQELKDSTTESLHVVCATVKKILNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVVKVYPRYCMKVRVMDHTDSASFVIFDRDAASLFNMSCAEMLNETQRNGTVGVIPPQISKLLDMNLLFKVETKPSTNPRFEQTFRVRKICTDSAIIKTFKDKWDNEEASISKINNEVGSLSTLLEKGKHLLACSTNNILSQDSASLTASSGSGKGKEAANLSSPAPITQDLMKKFTSTVINLDDDSVSALDLIKTQQSQTSVLSCKDLESLSGSSMESQPKDVEVNGTPVIYLLQTKPTAAEGKEIEKTVVADDEVVSSAENDNTVEKEFGELSGAKVYAKVLEGTPVELHQPVEAHEDLAVVNLEGDSPQHDKLFKTPKALGSKGVKGRKFVKRVSPDKVAEEDNAPIKLLKRVIKQEKM 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01233 699 Gene3D - 119 256 IPR012340 -
Trre6g01233 699 Gene3D - 10 118 IPR012340 -
Trre6g01233 699 CDD RPA1_DBD_C 299 411 IPR047192 -
Trre6g01233 699 Gene3D - 277 435 IPR012340 -
Trre6g01233 699 SUPERFAMILY Nucleic acid-binding proteins 10 119 IPR012340 -
Trre6g01233 699 CDD RPA1_DBD_B_like 146 250 - -
Trre6g01233 699 CDD RPA1_DBD_A_like 26 113 - -
Trre6g01233 699 SUPERFAMILY Nucleic acid-binding proteins 126 253 IPR012340 -
Trre6g01233 699 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre6g01233 699 SUPERFAMILY Nucleic acid-binding proteins 280 426 IPR012340 -
Trre6g01233 699 PANTHER OS03G0429900 PROTEIN 12 417 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g01233 699 Pfam Replication factor-A C terminal domain 300 410 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01233 Trre-Chr6 9474730 9477712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01233 21 376 Core DNA Replication Machinery Family AT2G06510 23.262 4.61e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01233 - - tpra:123915045 845.499