Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01232 ATGGATGAAGGACAATCTAAAACTCATACACAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTATCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATTTTCACAAGAAGAAAACCAACGGATGATATGTTTGTTGCAGAACTAAGTTTGAAAACATGGATCAGTGAATCAATGCCTAATTCGATTATGGAGGTCCTAGATTCTAATTTATTCCAAAAGAATGGGGAACAAACCAATGGCATATTGACTCACATGTCATCTATTTTTGGTTTAGCCCTAAATTGTTGCGAATATTCACCTGAAGCAAGAATTAGTTTGGCAAATGTTACTGCGTCGCTAATCAAAATCAAGACTTTGGTTCTTGGTGAAAATGGGGTCTAG 417 0.3669 MDEGQSKTHTQTLATIGYLAPEYGSKGIVSIKGDVYSYGIMLMEIFTRRKPTDDMFVAELSLKTWISESMPNSIMEVLDSNLFQKNGEQTNGILTHMSSIFGLALNCCEYSPEARISLANVTASLIKIKTLVLGENGV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01232 138 Pfam Protein tyrosine and serine/threonine kinase 4 124 IPR001245 GO:0004672|GO:0006468
Trre6g01232 138 SUPERFAMILY Protein kinase-like (PK-like) 6 129 IPR011009 -
Trre6g01232 138 Gene3D Transferase(Phosphotransferase) domain 1 1 130 - -
Trre6g01232 138 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01232 138 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01232 Trre-Chr6 9473094 9473894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01232 14 129 Receptor kinase-like Gene Family AT3G47570 36.207 2.72e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g01232 PK_Tyr_Ser-Thr 4.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01232 - K13420 tpra:123895879 230.335