Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01229 ATGATTTCCGAACATAATTCATATCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAAGACAGCCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATTAAGCCAGATGCAATGAGCAGAAGTGTTGGCATGGATAACAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACAGTATTAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTTAGTCTACACACTAGGCTCATTGATGACTTGGACGAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTAGCAGTTTTAAACAAACGCACAAAAGGTGGTTGCTCATGCTTGTGCATGCTATTATCGGTGATTGGTATAGTGGTTTTGGTTGTTGTGATATGGCTTCTGGTCAAATATTTGTAA 618 0.4159 MISEHNSYPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDSLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRSVGMDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLVKYL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01229 205 SUPERFAMILY SNARE fusion complex 100 170 - -
Trre6g01229 205 Pfam SNARE domain 146 197 IPR000727 -
Trre6g01229 205 PANTHER SYNTAXIN 21 192 IPR045242 -
Trre6g01229 205 FunFam syntaxin-51 isoform X2 111 173 - -
Trre6g01229 205 Gene3D - 110 173 - -
Trre6g01229 205 CDD SNARE_Qc 112 169 - -
Trre6g01229 205 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 109 171 IPR000727 -
Trre6g01229 205 SMART tSNARE_6 104 171 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01229 Trre-Chr6 9462743 9464405 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01229 1 205 SNARE and Associated Proteins AT1G16240 74.038 1.64e-108 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01229 K08503 - gmx:100799465 332.413