Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01228 ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCACTGGCATGATTTCCGAACATAATTCATATCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAAGACAGCCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGAAATTAAGCCAGATGCAATGAGCAGAAGTGTTGGCATGGATAACAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACAGTATTAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTTAGTCTACACACTAGGCTCATTGATGACTTGGACGAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTAGCAGTTTTAAACAAACGCACAAAAGGTGGTTGCTCATGCTTGTGCATGCTATTATCGGTGATTGGTATAGTGGTTTTGGTTGTTGTGATATGGCTTCTGGTCAAATATTTGTAA 690 0.413 MASSSDSWMKEYNEAMKLADDITGMISEHNSYPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDSLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRSVGMDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLVKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01228 229 PANTHER SYNTAXIN 38 216 IPR045242 -
Trre6g01228 229 FunFam syntaxin-51 isoform X2 135 197 - -
Trre6g01228 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Trre6g01228 229 Gene3D - 134 197 - -
Trre6g01228 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Trre6g01228 229 CDD SNARE_Qc 136 193 - -
Trre6g01228 229 Pfam SNARE domain 170 221 IPR000727 -
Trre6g01228 229 SMART tSNARE_6 128 195 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01228 Trre-Chr6 9462743 9464477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01228 1 229 SNARE and Associated Proteins AT1G16240 73.707 9.85e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01228 K08503 - gmx:100794038 375.941