Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01208 ATGGCGTCTTCGGATGACGAAGTTGATACGCAGCCAATTTTTGTATCAAATTACCATTTCGTAGATGATAAAGATGCACCCGTTTCTTTTTCTGTTTTGCCAATTCAATGGAGTGAGTCTGAGAGTCTTGAAGGGAAGAAAGAGAAGGTTTTCCTTCACGGTAACGCGGATAATGGGTTGCAGAAAATTTTCATTCAAGTCAAAGCATGGAGGTTTGATCTTTCCAATGTCAAGCCCGAGATATCAGTGTTATCTAAGGATGGGAGATGGATTAAACTTCAGAAGCCAAGGAAGAGTTATGAAGATATCATAAGGACTGTTTTGATTACTGTTTATTTCATGCATTATGTGAAGAAGAATCCTGAAACATCGGCAAAATCTGTGTGGGATAGCTTGAGTAAGAATAAGGATTTTAGCTATTATGAAGTTAAGCCTTCACAAAATGATTTGTTAAACCATATGGCTTTAATGGGTGAAGCTGCCAAAAGGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCACGGTTCTGGAAGATAAAGATAGGATGAGGATTAAGAAAATTCCTGATGAGGAAGTTAAAGAGCTAGCACGACCTGGATTTATAGTTGATGATATTGACGATGATGGAATTGATGAAACTGTTGCTGAGGAAGAGTCAGATGAAGAGGATGAGTTATTTGATTCTGTTTGTTCGTTTTGTGACAATGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGACGGTGAAGAATCTTCTTGTGCCTCTCTTGGATTTAGCCGGAAGGAAGTTGAGGAGATCCAAAATTTCTATTGTAAGAATTGCAAATATAATAAACACCAGTGCTTTGCATGTGGCGAACTAGGCTGTTCAGATAAATTTGCTGGTGCTGAGGTCTTCAAATGCGCTTCTGCAACCTGCGGCTTCTTTTATCATCCACAATGTGTTACGAAGTTACTTCACCGGGTGGTTGATGATGTTTCACCGGAGCTTGCAAGAAATATAGCTAGGGGGGAATCTTTCACTTGTCCTGCTCATTATTGCTGTATCTGTAAAGAAATGGAAAACAAGAAGGAACACGAGTTACACTTTGCTGTTTGTAGGCGTTGTCCCAAGTCATATCATCGCAAATGTTTGCCAAGAAAGATTGCTTTTGAAGACATAGCGGAAGAAGGGATTGTGGCCAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGCATTCTTATTTATTGCCTAAAGCATGAGATAGATGATGAACTTGGAACTCCTATAAGAGATCATATAAAATTTCCCATTGTTAAAGAGAAGACAAAGCCTGCAACCAAAGAAGTTTTAAACAGGAACAATGCTAAGTTAGACGATTTACCTGTCAAAAGACCTAGTGCTAAATTATCTAAACTGTCTGGTAAAATGTCCTCTGGGAAAGTTGGTATTGAGAATCCTGAAAAGATTTCTGGATCAAATATCCCTAGAAAGAAAGCAAATGAAGCATCAAGGAGGTCTTTGAATGAAACTAAGAGGTCAACTTTAAAGGAAACAGAAAGGTCTGACTATGAGGGAAACCAGCCCTCACTGGGTGAGCAACTTTATTCTTTCTACCAGAAGGGTTCCAAGCAAATTAGTTCTGGCAATCATAATAATGTATCTGATAACACCCTATCTGTTAAGCGTACTAAAAAGCTGAGCAGTGCACCACCCCAATTAGATGCAGATTCAGAGAGGAGATTGTTGGCTTTGTTTAAAGAAGCTTCATCATCAATTACTATGGAGAAAGTCATAAAAGAACATAAATTTGCTTCTACTCACACTCACTCACTGAAAAATGTTGTGGAGAAGACTATTACAGTGGGAAAGTTGGAAGGTTCAGTTGAGGCTGTTCGAACGGCTTTAAGGATGCTGAATGAAGGACATAACATTCGGGATGCAGAAGCTGTTTGTGGTCCCGATGTCATGAACCAGATATTCAAGTGGAAGGATAAGTTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGCTACACATCATATGGTCGCCATTTTACACAAGTGGAAAAGCTGGAAGGGATTGTGGATAAACTCCATTGGTATGTTCAGAATGGTGATACGATTGTGGACTTCTGCTGTGGTGCTAATGATTTTAGCACACTCATGAAGAAAAAACTTGAAGAGACTGGGAAGAGATGCTCGTACAAAAACTTCGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTGTCCAGCGAAAGGAGTTGCCTCCAGGGTCACAGTTGATCATGGGCCTCAATCCCCCCTTTGGACTTAAAGCAGCTTTGGCTAACAAGTTTATAGACAAGGCTTTAGAGTTTGACCCTAAGCTCGTGGTTCTTATAGTACCACCTGAAACGCAGAGGCTGGATAGAAAACGGAAACCATATGATCTTGTCTGGGAGGACGAGAGGTTTCTATCAGGCAAGTCGTTTTATCTACCTGGATCAGTTGATGCTAATGACAAGCAAATGGAGCAATGGAATGTAAAGCCACCTCCACTCTACCTTTGGAGCCGTCCAGACTGGGCTGATAAGCATAAACTCATAGCCCAGGAGCATGGTCACCTGAGACAGCATCAACATGACCTATCCAGGATGGAAAGCTTTGATATGGATAAATCCTCTGCCAGTCATACTATGGATGATGAATATGTTGATGATACCATGCTGGATCGTATGCTGGATCATGATTTCTTGAAGTCAACTAATGATGAAGATTGTTCATTTATGGTAGGACATAAGGAAGGCCTGTCCCATGGAAATGTTGATCGACAGGAGTATTTTGTGACTAAGGCTGAGAACACTTCATGGAAAAGGAAACAAATAGATGATGGAAGGGAACCGGCTGTGACCTCACAAGCTAAAAGACAAAATATAAATGAAACGCATGAGGGAGTACTGGACCATGGTATCTCAAATCCAATTAATTTCGAAGGATATCATTCCGAATCAGATATGGCAATTTCAGATAATGAGGCTGGTGATAATGGTTATACACCTCTGGAGCCGCACTCTTCCGTTGGTGATAATGGCTATAGGCATCTTGAACCCGTCTCTTCCTCCCGGATGGAGTTTGGAGAAGCCTATGATGTGACCCAAAATTGGCCAAATGTTGCTGATCCCCTTCCTGATTACGGGTTGGCAGATTTACAAGATCACAATAGCAGGCATCTGGGAGACAGCACAAGTAGCCTTGGATATAGACCTTATCTCAGGGAGGAGGATAATCCAATTCACCCTCCTGGAGTTCCGAATCCTGATCCTATGAGTAGTAGTTATCTATCTGGTCATGGTCCTGCTCATAACCAAATGGGATCTACTTATTCTGTACTTGGTTCTGCATCTGAATTGCCTTACATGATGAATACACCAGCTATGCAGACAAATACACCAGCTATGCAACGATATGCACCTCGTCTCGATGAATTAAACCATGTAAGGACAAATTCTTTGGAACCTGAACGCCCTATAATTGGCCGAAGTACCACTGCTGAACGTAGTACCCCCCAACCTGGATCTGGAAATCTGCCGCCTGGTTTTCCTGGTGGTCCTTCCCATTTGTATTCACGCCAGAATTCATCAAGTTGGTTTAGTGATTAA 3675 0.4122 MASSDDEVDTQPIFVSNYHFVDDKDAPVSFSVLPIQWSESESLEGKKEKVFLHGNADNGLQKIFIQVKAWRFDLSNVKPEISVLSKDGRWIKLQKPRKSYEDIIRTVLITVYFMHYVKKNPETSAKSVWDSLSKNKDFSYYEVKPSQNDLLNHMALMGEAAKRDAVLAKSKLLLTVLEDKDRMRIKKIPDEEVKELARPGFIVDDIDDDGIDETVAEEESDEEDELFDSVCSFCDNGGELLCCDGKCMRSFHANEEDGEESSCASLGFSRKEVEEIQNFYCKNCKYNKHQCFACGELGCSDKFAGAEVFKCASATCGFFYHPQCVTKLLHRVVDDVSPELARNIARGESFTCPAHYCCICKEMENKKEHELHFAVCRRCPKSYHRKCLPRKIAFEDIAEEGIVARAWEGLLPNNRILIYCLKHEIDDELGTPIRDHIKFPIVKEKTKPATKEVLNRNNAKLDDLPVKRPSAKLSKLSGKMSSGKVGIENPEKISGSNIPRKKANEASRRSLNETKRSTLKETERSDYEGNQPSLGEQLYSFYQKGSKQISSGNHNNVSDNTLSVKRTKKLSSAPPQLDADSERRLLALFKEASSSITMEKVIKEHKFASTHTHSLKNVVEKTITVGKLEGSVEAVRTALRMLNEGHNIRDAEAVCGPDVMNQIFKWKDKLKVYLAPVLYGNRYTSYGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSTLMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQRKELPPGSQLIMGLNPPFGLKAALANKFIDKALEFDPKLVVLIVPPETQRLDRKRKPYDLVWEDERFLSGKSFYLPGSVDANDKQMEQWNVKPPPLYLWSRPDWADKHKLIAQEHGHLRQHQHDLSRMESFDMDKSSASHTMDDEYVDDTMLDRMLDHDFLKSTNDEDCSFMVGHKEGLSHGNVDRQEYFVTKAENTSWKRKQIDDGREPAVTSQAKRQNINETHEGVLDHGISNPINFEGYHSESDMAISDNEAGDNGYTPLEPHSSVGDNGYRHLEPVSSSRMEFGEAYDVTQNWPNVADPLPDYGLADLQDHNSRHLGDSTSSLGYRPYLREEDNPIHPPGVPNPDPMSSSYLSGHGPAHNQMGSTYSVLGSASELPYMMNTPAMQTNTPAMQRYAPRLDELNHVRTNSLEPERPIIGRSTTAERSTPQPGSGNLPPGFPGGPSHLYSRQNSSSWFSD 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01208 1224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 288 IPR013083 -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 1171 1224 - -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 502 527 - -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 452 469 - -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 452 533 - -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 545 570 - -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 545 577 - -
Trre6g01208 1224 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 889 - -
Trre6g01208 1224 SMART PHD_3 230 285 IPR001965 -
Trre6g01208 1224 SMART PHD_3 357 424 IPR001965 -
Trre6g01208 1224 SMART PHD_3 290 356 IPR001965 -
Trre6g01208 1224 CDD PHD2_NSD 290 355 - -
Trre6g01208 1224 MobiDBLite consensus disorder prediction 1096 1126 - -
Trre6g01208 1224 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 133 IPR022702 -
Trre6g01208 1224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 378 IPR013083 -
Trre6g01208 1224 CDD PHD3_NSD 356 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01208 Trre-Chr6 9301357 9313846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01208 219 331 PHD Transcription Factor Family AT3G14980 30.973 2.70e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01208 - - mtr:11437997 2043.08