Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01205 ATGGGTATGATGAGTTTGATGGTTGCACTTAATCTTTCTGCAACTGATGTGGAAAAAAATATTGTTCATGATCATGCACAAGTTGTGTCTTTGACACTCTTTGTTGCTATTCTTTGTCTTTGTTTGTTAATTGGTCACTTGCTTGAAGGAAATCGATGGATTAATGAATCTATTGTCGCTGTTTTTGTTGGGTTCATTACTGGAGCGATAATTTTGTTAATCACTAAGGGAAAAAGTTCTCACATCCTTATATTTGATGAAGAATTATTCTTCATATATCTTCTTCCTCCCATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACGGTTCTTCCACAACTTTTTCACAATCATATTGTTCGGTGTAATCGGTGTTTTTATTTCAGCTTCTATTATTACAGCCGGCAGCTGGTGGCTCTTCCCCAAGTTGAACTTTCTTGACCTCAACGTGCGAGATTATCTTGCTTTAGGAACAATTTTCTCCTCAACAGACACAGTTTGTACGCTACAGGTTCTCCATCAAGATGATACTCCTTTACTATACAGCCTAGTATTTGGGGAAGGAGTGGTAAACGATGCTACATCAGTCGTACTCTTCAATGCAGTCCAAAAGATTGATGTTTCGAAACTTGACGGCCGGTCATTGAGTGTTATTGGTGATTTCTTGTATCTATTCTCAACAAGTACTGCTCTTGGAGTCATAGCTGGACTTATCACAGCATATATCTTGAAAGCCTTAAGTTTTGGAAGACATTCAAGTGTTCGTGAAATCTCAATGATGATGTTAATGGCATACCTGTCCTACATGTTGGCAGAGCTATTTGAGCTAAGTGGAATCCTCACTGTTTTCTTTTGTGGAATAACAATGTCACATTATGCATGGCATAATGTGACTGAAATTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCGTTTATTGCAGAAACTTTCATATTTTTTTACGTCGGTATGGATGCCCTTGACATTGCAAAGTGGAGGATGACCGAATTAGGAATTGGAAATTTGATGGGAATTTACAGCGGCTTAATCTTTTTAATATTACTTGGAAGGGCTGCATTTGTTTTCCCCCTCTCCGCACTTGCCAATTATATGAATAGACGCTCTGAACAAACACCGAGTATCACATTCCAACACCAGATAATTATTTGGTGGGCGGGGCTAATGAGAGGAGCAGTTTCGATTGCTTTGGCTTTCAAACAGTTCACGTACTCGGGAGTTACTTATAATCCAGTTAATGCGACAATGATCACAAACACCATTATTGTTGTCCTTTTCACCACACTGGTGTTTGGTTGTCTAACAAAACCACTTATTCGATATCTACTTCCACACCATGCAGCAAGAGTAAACAACAGAAATGAAGAAGAATCAAGGGCACGCGCTGAGGACATGAATCTACCTTTGTTATCCTTTGAGGAATCGGCAGCAACCAACATTAGCCGCGCAAAGGAAAGTCTATCCATGTTAATAGAAAGTCCTGTGTACACCATACATTACTATTGGAGAAAGTTTGATGATGCCTACATGAGACCGATATTTGGAGGACCGCGTGCTAACCCTTCAGACTGCTAG 1602 0.3939 MGMMSLMVALNLSATDVEKNIVHDHAQVVSLTLFVAILCLCLLIGHLLEGNRWINESIVAVFVGFITGAIILLITKGKSSHILIFDEELFFIYLLPPIIFNAGFQVKKKRFFHNFFTIILFGVIGVFISASIITAGSWWLFPKLNFLDLNVRDYLALGTIFSSTDTVCTLQVLHQDDTPLLYSLVFGEGVVNDATSVVLFNAVQKIDVSKLDGRSLSVIGDFLYLFSTSTALGVIAGLITAYILKALSFGRHSSVREISMMMLMAYLSYMLAELFELSGILTVFFCGITMSHYAWHNVTEISRITTRHVFATMSFIAETFIFFYVGMDALDIAKWRMTELGIGNLMGIYSGLIFLILLGRAAFVFPLSALANYMNRRSEQTPSITFQHQIIIWWAGLMRGAVSIALAFKQFTYSGVTYNPVNATMITNTIIVVLFTTLVFGCLTKPLIRYLLPHHAARVNNRNEEESRARAEDMNLPLLSFEESAATNISRAKESLSMLIESPVYTIHYYWRKFDDAYMRPIFGGPRANPSDC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01205 533 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre6g01205 533 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre6g01205 533 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre6g01205 533 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre6g01205 533 PANTHER SODIUM/HYDROGEN EXCHANGER 24 523 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Trre6g01205 533 Gene3D - 150 202 - -
Trre6g01205 533 NCBIfam sodium/hydrogen exchanger 3 29 474 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre6g01205 533 Pfam Sodium/hydrogen exchanger family 33 448 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01205 Trre-Chr6 9283328 9288071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01205 17 533 Antiporters AT5G55470 70.825 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01205 - - gmx:100813332 826.239