Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01178 ATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATCGTGGGACACTGACGAGGAACGTCTCAGGGAGTATTTTGCGACATATGGGGAGGTAATTGAGGCTGTGATCATGCGAGATCGTGCAACAGGTCGTGCTCGTGGTTTTGGATTCGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTATCGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGTACAATATAAGCAGACAGACTGGTAGCGTACAGGGATCGCCTGGTCCCGGTCGTACAAAGAAGATTTTTGTTGGAGGCTTACCGTCAACCATCACCGAAAGTGATTTCAAGATGTATTTTGATCAATTCGGTACAATTACTGATGTCGTAGTTATGTATGATCACAATACACAAAGGCCAAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCGGTTGATAGAGTTCTTTACAAAACATTTCATGAACTCAACGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCGAAAGAACTTTCACCTGGTCCCACCCGAAGCCCATTGATAGGAGGATATAACTATAGTTTGAACAGTAGGGCTAGTAGCTACCTAAACAATTATGGTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGAATGGATGGTAGGTTTAGTCCACTCACTGGTGGCAGAACCGGTTTTACCCCTTTCGGAAACACCGGTTATGGAATGGGGATGAACTTGGAATCGGGATTGAGCCCAAATTTTGGAGGTAACTCTAATTTCGGGAACAATTTAGGGTATGGTCGGATATTTAGTCCTTTCTATAGCGGAAACTCGAGCAGATATGCTACACCGATAGGCTATAATGGGGGTAGTGGAAGAGGAGATTCTCTTATGAACTCGACTTCTAGGAATGTCTGGGGAAATGGAGGTCTGGGTACTGCTAATAACCCGGTCAGCCCTGGTGCGTTCTTGGGATCTGGAAGTGGAGCTTTCGGTGTTTCCATTGGAAACAATGGCACAAACTGGGGTCCTTCGATTCCGGCTCAGGGTGGAGGAGCTGCTTCTGGCTATGCTACTGGGAATAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGCAGCAGGATATGGAAGAAACAACAATGCAGTTGTGAATCCATCCTCCACATTTAATGCATCAGCCGGCGGTTATGACGGATCCTATGGGGACTTATACCGCAGTGGCAGCGGTTCGGTTTACAATGACTCTGCTTGGAGATCTGCTGCTTCTGAGATAGATGGTTCTGGTTCGTTCGGTTATGGTCTTGGCGGTATTGCATCAGATGATCCTGTGAAGACTTCCGAGGGCTATATTGGAAGCTACAATGTTGCAAGTAGACAACCTAATAGAGGTTAG 1437 0.4579 MESDLGKLFIGGISWDTDEERLREYFATYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIIDKHIIDGRTVEAKKAVPRDDQYNISRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGGYNYSLNSRASSYLNNYGQGYSMSPIGGYGVRMDGRFSPLTGGRTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNGGSGRGDSLMNSTSRNVWGNGGLGTANNPVSPGAFLGSGSGAFGVSIGNNGTNWGPSIPAQGGGAASGYATGNNVYEGGDSSFGLGAAGYGRNNNAVVNPSSTFNASAGGYDGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVASRQPNRG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01178 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
Trre6g01178 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Trre6g01178 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Trre6g01178 478 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Trre6g01178 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Trre6g01178 478 MobiDBLite consensus disorder prediction 86 105 - -
Trre6g01178 478 MobiDBLite consensus disorder prediction 86 100 - -
Trre6g01178 478 CDD RRM2_Hrp1p 107 184 - -
Trre6g01178 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Trre6g01178 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Trre6g01178 478 Gene3D - 6 88 IPR012677 -
Trre6g01178 478 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Trre6g01178 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Trre6g01178 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trre6g01178 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Trre6g01178 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Trre6g01178 478 Gene3D - 105 185 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01178 Trre-Chr6 9108067 9109906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01178 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.596 9.64e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01178 K14411 - gmx:100794390 840.491