Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01174 ATGGACGCCGGCGAATCTCAATTCCGGCGACAAGCTCCCGGAGATAAGGAACATGAACATGAAGATCCAAATCGAACTGGGTCACGACCCGATTCTGCTTCAGACGGAGCTACCACTTCTGCTAACACTTCCGGAGCTAGATACAAGCTGATGTCTCCGGCGAAGCTCCCGATCTCTAGGTCACCGGTTTTAACAATTCCGCCGGGACTAAGTCCGACTTCATTTCTCGAATCCCCCGTTCTACTCTCAAATATGAAGGTAGAACCTTCACCCACAACAGGTTCCCTTCCTAGGCTTCAACAAACAGGACATGGTTTTATAACTTCTTCTGCGTCTGCTACGTTTCCTGTAACCAGTGTACGCTTAAATAGTAATACTGTTGATGAAGGAAGATACAGTTTCTTTGAGTTCAAACCGCACGGTAGATCAAATATGGTTCCTGTTGACTTTCGCAACCAATCATGTGAAAAAGCTGCTCAGATAGATGGTCAAGGAAAAGTTCAATCTTCTGTTTCTCCATTAGTCAAAAGTGAAATAGCAGCCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGGTTAGTTCAGGGGCGAGTGCTCATGCTGAAGTCAATTTGGACGAATTAAATCCCAGTGGCAACATACCAACTGGGCTTCAAGCATCACAAGTTGATGGTAGGGGCAGTGGACTTACAGTTGCTGCCGACAAGGCATCCGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTCGAACGCTCTCATGATGGCCAAATTACCGAAATAGTTTACAAAGGAACTCATGATCATCCTAAACCTCAACCAAGCCGTCGGTACTCTGGTGGAAATACTATGTCTGTGCAAGAAGATAGATCTGATAGGGCTTCTTTGACTAGCCAAGACGCTGAGCGTGACAGTACTCCAGAGCTATCGCCTATAGCAACAAATGCTGATAGTCCAGAGGGTGCAGGGTTTTTGTCTAACCGGAGTAATGATGAGGTTGATGAAGACGATCCTTTCTCAAAGCGAAGAAGAATGGATCTTGACATCATTCCTGTAGTCAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGGCAGAAGGTGGTAAGAGGAAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGAGCATCTCATGACCCAAAAGCTGTAATAACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAATAGTCATGATATGGCAGGACCATTAGCTGCAGGTGGACACACAAGAATCCGGCGAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTTAGCCCAAGAACTGCTGAAAATAGATCAAACGGTGGTCAAGGGAGATTAATGCTTACTGAATATGGGGAGAACCAAACTCACACCAGCAATTCCAGTTTCAAGTTTGTTCATAATACACCGCCTACGGTATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAATTCATCTTTAAACCATTCGTCTTATCCTTGCCCGCCGAACATGGGAAGAATACTTATGGGTCCCTAA 1749 0.4431 MDAGESQFRRQAPGDKEHEHEDPNRTGSRPDSASDGATTSANTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTGHGFITSSASATFPVTSVRLNSNTVDEGRYSFFEFKPHGRSNMVPVDFRNQSCEKAAQIDGQGKVQSSVSPLVKSEIAAPSDEISLSSSPVQMVSSGASAHAEVNLDELNPSGNIPTGLQASQVDGRGSGLTVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNTMSVQEDRSDRASLTSQDAERDSTPELSPIATNADSPEGAGFLSNRSNDEVDEDDPFSKRRRMDLDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPLAAGGHTRIRREESDTISLDLGMGLSPRTAENRSNGGQGRLMLTEYGENQTHTSNSSFKFVHNTPPTVYFGVLNNNSNPYGSRENPSDNSSLNHSSYPCPPNMGRILMGP 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01174 582 MobiDBLite consensus disorder prediction 1 47 - -
Trre6g01174 582 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 ProSiteProfiles WRKY domain profile. 236 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 FunFam WRKY transcription factor 232 301 - -
Trre6g01174 582 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 MobiDBLite consensus disorder prediction 29 47 - -
Trre6g01174 582 MobiDBLite consensus disorder prediction 455 478 - -
Trre6g01174 582 SUPERFAMILY WRKY DNA-binding domain 239 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 MobiDBLite consensus disorder prediction 304 320 - -
Trre6g01174 582 MobiDBLite consensus disorder prediction 546 582 - -
Trre6g01174 582 FunFam WRKY transcription factor 33 387 453 - -
Trre6g01174 582 MobiDBLite consensus disorder prediction 290 367 - -
Trre6g01174 582 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 MobiDBLite consensus disorder prediction 1 28 - -
Trre6g01174 582 Gene3D WRKY domain 385 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 Gene3D WRKY domain 232 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 497 IPR044810 GO:0003700
Trre6g01174 582 MobiDBLite consensus disorder prediction 546 570 - -
Trre6g01174 582 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g01174 582 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01174 Trre-Chr6 9053770 9058760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01174 51 582 WRKY Transcription Factor Family AT4G26640 54.775 0.0 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g01174 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01174 - - gmx:100781491 865.144