Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01173 ATGCAAACATCTCAGAAACATGAAATTTCTTATGGTTCTGGCAGGTTCTACGTTGAGCCTGTACAGAATCTGGACTCATATGGCTTACCTTCGAGTGAGAATTTAGAAAATTATTCTTCCTCTGATAACAGCAGCCAAACATTCTATCCTTCTCATCAAACTCTAGAACCATACCGCACCTTTGAATCCGCTTCAACAAGTAACAACAGTTTCCCATACCAAAATTCTCCGTCTACTCTCAGTTTGTCACCAAACAATAGTCCAGTATCAAAGCTAGAGTCAAATTCATATGTGTTAAGGCCACAACATTCTCTTGAGTTTGTTAATGGTTCTCCTAAGGATGAGGACTCTTACTTGAGACACGACCTTGATGACCTGAGTCATATGATGCTAGAGCTGGAATCTGTTATGCTCGGACAAAACGCAGACATGCTAGATATATATGATGCTGAAGTTAAACAAGAACCATCTTCAATCTTATTAGAGACAGAGAAGTGGAAAAAAAAGATGGACATAGTATCTAAAGGAGATCTGAATGAGATGCTTTATACTTGTGCCGAAGCAGTGGATCTGAATGACATGGAGACAATTGAATGGATGGTTACCGAGCTACGCAAAATAGTATCGATTTCGGGCACTCCGGTCGAACGATTGGGAGCGTACATGTTGGAGGCTCTTGTTTCGAGGATGGCTTCTTCAGGAAGCACAATCTACAAATCATTAAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCTTACATGCATGTACTTTATGAAATATGTCCGTACTTTAAATTCGGGTATATGTCGGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAAAGTGAAGTGCACATAATTGATTTTCAAATTGCTCAAGGAACTCAGTGGGTGAGTCTGATCCAGGCTCTTGCTCGGAGGCCTGGAGGACCCCCAAAGATTAGAATTTCAGGTATTGACGACTCGTATTCAGTTTATGCGCGCGGAGGAGGGGTGGATATAGTGGCGGAAAGGTTATCAACGCTTGCACAGTCATGTCATGTACCCTTCGAGTTCCATGCTGTTAGAGTTTCTGCTTCTGAGGTGCAACTCGAAGACTTTGAACTTCGACCGAATGAAGCTTTGGCGGTGAATTTTGCCCTTATGCTACACCATGTGCCGGATGAAAGTGTCAACATTCATAATCATCGTGACCGGTTGTTGCGATTGGCTAAGCACATGTCTCCTAAGGTGGTGACTCTAGTTGAGCAAGAATTCAATACCAATAACGCTCCATTCTTGCAGCGTTTTGTCGAGACAATGAACTACAACTCGGCTGTTTATGAATCGATTGATGTTGTTCTTCCAAGGGATCACAAAGAGAGGATTAATGTCGAACAGCACTGTTTGGCTCGAGAAGTTGTCAACTTGGTAGCCTGTGAAGGGGAAGAAAGAGTGGAACGTCACGAGCCTATGAGTAAGTGGAGAATGCGTTTCGCGAGGGCTGGATTTACTCCTTATCCATTGAGCTCCTTCATCAATTCTTCAATCAAGGATCTTCTCGATAGCTACCGTGGACATTACACTCTAGAAGAGAGAGATGGTGCACTATATCTTGGTTGGAAGAATCAAATTCTTGTTGCTTCTTGTGCTTGGAGATGA 1647 0.4262 MQTSQKHEISYGSGRFYVEPVQNLDSYGLPSSENLENYSSSDNSSQTFYPSHQTLEPYRTFESASTSNNSFPYQNSPSTLSLSPNNSPVSKLESNSYVLRPQHSLEFVNGSPKDEDSYLRHDLDDLSHMMLELESVMLGQNADMLDIYDAEVKQEPSSILLETEKWKKKMDIVSKGDLNEMLYTCAEAVDLNDMETIEWMVTELRKIVSISGTPVERLGAYMLEALVSRMASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESEVHIIDFQIAQGTQWVSLIQALARRPGGPPKIRISGIDDSYSVYARGGGVDIVAERLSTLAQSCHVPFEFHAVRVSASEVQLEDFELRPNEALAVNFALMLHHVPDESVNIHNHRDRLLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFVETMNYNSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHEPMSKWRMRFARAGFTPYPLSSFINSSIKDLLDSYRGHYTLEERDGALYLGWKNQILVASCAWR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01173 548 ProSiteProfiles GRAS family profile. 169 548 IPR005202 -
Trre6g01173 548 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 542 IPR005202 -
Trre6g01173 548 MobiDBLite consensus disorder prediction 24 93 - -
Trre6g01173 548 MobiDBLite consensus disorder prediction 25 93 - -
Trre6g01173 548 Pfam GRAS domain family 179 548 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01173 Trre-Chr6 9049994 9051640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01173 1 548 GRAS Transcription Factor Family AT1G50600 54.710 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre6g01173 GRAS 2.1e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01173 - - gmx:100785400 877.085