Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01171 ATGTGTGATCCGTGCGCAAGTGTACTTTCATGTGCTCGTGAAACCTTGCTTCCACTAACCCGTGATCATTTGCTTCCATTTGCTCGTAAACATCTGTTTCCAATAGCCCTTGATCATTTGCTTCCTATACTAAAGGAATCTATCAACATGATTAGGGGTGTCCCAAATGATGAAATTGCACAAATGAAACATGAACTTGAAACCATTGAAGACGCCATCCATCAAGCAGATAAATTGGCTGATGCTGAAGGAGATGACCTAGCTGATGGAACCAGAGAAAAGATGAAACAGCTGATGGAAGCATTTTTTCACATACAAGATGCCATTGATGAATACATCATCCGTGAGGAGCAACAACTTCCAGATCCTCGATGTGTTGATGGTGCTTCTGACTATATCAAAACTAAGATGCTCCGTCTCCAAATAGCCCATGATATTCAGATCATCAAATCCCGAATTAGTGAAATAAAAGATACAAGCTCTGAAACGGATCATGAAGGTTCAAGCAGTTCTATTACAAACCCAAATGACACAGCATTGCAGAACCTTCGAAAGGCTCCCTTTTACATGAAGGAAGCTGATGTTGTCGGCTTTGAAAAGCCAAGAGACAAATTGGTTGATTGGCTGGTAAAGGGAGAGGATAAGCTCACAGTCGTCTCTGTGGTAGCAATGGGAGGGCAAGGAAAAACCACTCTTGCTAGAAAAGTTTTTGAAAGCAAAGAGGTCGTGGGAAACTTTGAATATCGTAGATGGATCACAGTGTCACAATCATACAATATAGAAGAGTTGCTGAGAAGCATTTTGAAGGATCTTTGCGAACAACAAAAAGTCAATCCTCCTCAAATGATTCACGAAATGAATAAAGAGTTATTAGTGGATGAAGTGAGAAACTACTTGCAGGAGAAAAGGTACGTTGTAGTTTTTGATGATGTATGGAACTCACCTTTTTGGGCTGATATTAAATTTGCTATGATTGATAAACAAAAAGGTTGTAGGATATTAATCACCACTAGGTACATGGATGTTGCCACTTCTTGTAGGGAATCTTGTTTAGTTGAAATTCATGAATTGAAAGGTTTAGATGATGAACAATCTTTAAAATTGTTCAATAAGAAGGCATTTTATGACTTGAAGGAAGTTTGTCCGGATAATCTTCGTGATATATCTTCCAAAATTGTTAAAAAATGTGGTGGATTACCACTAGCGATTGTAGTCACCGGTGGTCTTTTATGCAAAAGTAGAAATACAGCTGAATGGTATAAGTTTAATGAAAATATCAAGACAAAGTTGAAGAAAGATTATGTGATAAACAAAATTTTAATTCTCAGTTACCATGATTTGTCTTACAATCTCAAGTCATGTCTGTTATATTTTGGAATATATCCTGAAGACAGTAAAGTTAATTCCAAGAGACTAATTCGGCAATGGATAGCTGAAGGGTTCGTAAAGGAGGAAGAGGGAATGACTTTGGAAGAGATTGCAGAAGGATATTTAACTGAGTTGATACATAGAAATTTGGTGCAAGTAGTTTCAGTCAGTATTGATGGAAGAGCAAAATGTTGCCGTGTTCATGATTTAGTGCATGCCATGATCCTTGAAAAGTTTAAGGATTTAAGTTTTTTCAAGAATATTAATGTTGATGGCCAGTCAACTTTAACTGGAATAACTCGACGCCTGTCAGTGACAACTAATTCAGATAATTTAGTGGAAAGTATTAATTGCTCACATGTTCGATCACTATTTTATATTGGAGCTAATTTATCTGAAACCTTTCTAAGGAAAATTACTACAAAATACAGGTTGTCGAAGGTGGTTGTCCTTAAGGATGATAAAAAACTTGAAATTCCCGAAGATTTGGGAAGTTTGATCTACCTGAAGTATTTGGAATTAAAAGATGGTCAAAAAACTTTTCATCCAATTCCAAAATCCATTGGCATGCTCGAGAATCTAGAGACCTTGGATTTAGGATTTATACGTTTCTATAAAATGCCGAAGGAGATTTGCAAGCTTAGAAAGCTTCGCCATTTTATTGGCTACGAAATTTCATTGATTGAATTGAAGGACGGTCTTGGAGGTTTGACATCCTTACAAACTCTACGTGGGGTTTATTTAGATGAAGGTGAAGATGATAGTGATAATAGCGTGATAGATCTAATACAAGAGTTAGGAAAGCTAAAACAGCTAAGGGAATTGGTCTTGCGCGGTGTTAAGACTAGATATACGAGTGCTCTGTCTTCCTCAATCAATGAAATGCAACTACTGGAGAAACTGTCTATTGGAGCAAAGTATATAGACACATTCATCGATATGGATTTAAATTCACCCCCACCTATGCTTCGACATCTTACTCTTGCAGGAAACTTAGGGATGTTACCTGAGTGGATTCCAAAACTTCAAAATCTTGTTAAGTTGAAACTTTGCTACTCCTTTCTAAAAGATGATAAAATGGAACTACTCAAAAACATGCCAAACTTGTTGACCCTGTCTCTTAGAAATGATGCTTACCAAACCAAAATGCGCATTGCCTATTTGCCTTCTCTAGAAACTCTTGAATTGTACAGTATCCCCAAACTTGATGAGTTACCAATAGGCATTCAACACTTAAAGAAGCTTAAAGATCTCCGGATTCCATCCACCGCGTATTACGGAGCTGATGACCGCTGGCTTCGGCATGTACAACCGAATATTAGTTTCACTTGGTAG 2703 0.374 MCDPCASVLSCARETLLPLTRDHLLPFARKHLFPIALDHLLPILKESINMIRGVPNDEIAQMKHELETIEDAIHQADKLADAEGDDLADGTREKMKQLMEAFFHIQDAIDEYIIREEQQLPDPRCVDGASDYIKTKMLRLQIAHDIQIIKSRISEIKDTSSETDHEGSSSSITNPNDTALQNLRKAPFYMKEADVVGFEKPRDKLVDWLVKGEDKLTVVSVVAMGGQGKTTLARKVFESKEVVGNFEYRRWITVSQSYNIEELLRSILKDLCEQQKVNPPQMIHEMNKELLVDEVRNYLQEKRYVVVFDDVWNSPFWADIKFAMIDKQKGCRILITTRYMDVATSCRESCLVEIHELKGLDDEQSLKLFNKKAFYDLKEVCPDNLRDISSKIVKKCGGLPLAIVVTGGLLCKSRNTAEWYKFNENIKTKLKKDYVINKILILSYHDLSYNLKSCLLYFGIYPEDSKVNSKRLIRQWIAEGFVKEEEGMTLEEIAEGYLTELIHRNLVQVVSVSIDGRAKCCRVHDLVHAMILEKFKDLSFFKNINVDGQSTLTGITRRLSVTTNSDNLVESINCSHVRSLFYIGANLSETFLRKITTKYRLSKVVVLKDDKKLEIPEDLGSLIYLKYLELKDGQKTFHPIPKSIGMLENLETLDLGFIRFYKMPKEICKLRKLRHFIGYEISLIELKDGLGGLTSLQTLRGVYLDEGEDDSDNSVIDLIQELGKLKQLRELVLRGVKTRYTSALSSSINEMQLLEKLSIGAKYIDTFIDMDLNSPPPMLRHLTLAGNLGMLPEWIPKLQNLVKLKLCYSFLKDDKMELLKNMPNLLTLSLRNDAYQTKMRIAYLPSLETLELYSIPKLDELPIGIQHLKKLKDLRIPSTAYYGADDRWLRHVQPNISFTW 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01171 900 Pfam Rx N-terminal domain 36 120 IPR041118 -
Trre6g01171 900 SUPERFAMILY L domain-like 522 879 - -
Trre6g01171 900 PANTHER DISEASE RESISTANCE PROTEIN RP 79 861 IPR044974 GO:0006952
Trre6g01171 900 Gene3D - 445 533 IPR036388 -
Trre6g01171 900 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 458 IPR027417 -
Trre6g01171 900 Gene3D - 35 147 - -
Trre6g01171 900 MobiDBLite consensus disorder prediction 157 178 - -
Trre6g01171 900 FunFam Probable disease resistance protein At1g61300 179 349 - -
Trre6g01171 900 Gene3D Ribonuclease Inhibitor 534 889 IPR032675 -
Trre6g01171 900 PRINTS Disease resistance protein signature 842 858 - -
Trre6g01171 900 PRINTS Disease resistance protein signature 298 312 - -
Trre6g01171 900 PRINTS Disease resistance protein signature 396 410 - -
Trre6g01171 900 PRINTS Disease resistance protein signature 218 233 - -
Trre6g01171 900 FunFam Probable disease resistance protein At1g63360 444 533 - -
Trre6g01171 900 Coils Coil 59 79 - -
Trre6g01171 900 Gene3D - 359 444 IPR042197 -
Trre6g01171 900 Pfam NB-ARC domain 199 432 IPR002182 GO:0043531
Trre6g01171 900 Gene3D - 176 353 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01171 Trre-Chr6 9028459 9031413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01171 216 407 WRKY Transcription Factor Family AT5G45050 27.461 2.08e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01171 K13457 - gmx:100819372 694.886