Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01170 ATGTGTGACACTGCAATTTCCTTAGCTCGTGATCACTTGCTTCCACTAGTCCGTGATCATTTGCTTCCACTAATAACGGAAGCAACCAACATGATCAGGGGTATCCCAAAAGAAATTGAAGACATGAAAGATGAAATTGAAAGCATTCAACAATTTATCAACAAAGCAGATAGATTGGCTGATGCTGAAGAGGACAACAAAAGCCACGGAATCAGAGCAACAATTAAGCAGCTGATAGAAGCATCTTTTCGCGTAGAAGATGTCATTGATGAATATATTGTCAATGAGGAACAACAAACTCCTGATCCTGGATGTGCTGCTGGTGCTATCTTGTTCAATACTATGATTCTTCGTCTCAAAGTAGCCTACACGATTCAGAGTATTAAAACTCGTATTAATGAAATCAAAGTTACAAGCGAAAAAGATCGTGGTTTTCAAATCCAATCTTCTTCAGAAAAAGGATCAAGTAGTTCTGTAGTAAACCCAAATTCCACGTTATTGGAGAACCTTAGAAAGGCTCCATTATACATGGATGAAAAGGATGTTGTGGGCTTTGAAGAGCCAAAAGACATACTTATTGAATGGCTGGTAAAGGGAAGAGCAGACCTCACAGTCGTCTCCGTGGTAGCAATGGGAGGGCAGGGAAAAACCACTCTAGCAAAGAAAGTTTTTGACAACAGCAAGGTCGTTGAACAATTTGAGTATCGTGTATGGATCACAGTTTCTCAACCATACAGTGTAGAAGGACTTTTAAGGGACCTGTTACAAAAGTTATCCAAACAAATGAAAAAAGAGATTCCTCGGAGTATTGATCAAATGGATCGAGACTCATTAGTTGACGAGGTGAGAACCACTTTGCGGCAAAAAAGGTATGTTGTTGTGTTTGATGATGTATGGAACATTCATTTTTGGGATGAAATTCAATTAGCTATGATTGATAACAAAAATGGTTCTAAGATATTAATCACAACAAGAAACATGGATGTTGCTACTGCTTGTAAAAAAATTTCTTTTGTTGAAGTGCATGAGCTAAAGAGTTTAACTAAAGAACAATCTTTGGATTTGTTCAATAAGAAGACATTCCGTGATTTGAACGGATGTTGTCCAGAAAATCTTATTGAGACATCTTCCAAAATCATTGAAAAATGCAATGGGTTACCACTAGCAATTGTGGTCATTAGTGGTCTTTTATCATGCAGATACAGAAATTCACTTGAATGGTATAAGTTTAGTGAAAACATAAGTTTAGAGTTAAAGGGTCGACATTCTCCGATAACAAAAATTTTAGGTCATAGTTACCATGATTTGTCTTACAATCTCAAACTGTGTTTATTATATTTTGGAATATTTCCCGAAGACAAAATTCTTCCTTCGAAGTCATTGATTTGCCAATGGATCGCCGAAGGGTTCGTGAAAGAGGAGAGGAGAAGGACTTTGGAAGAGGTTGCAGAAGGATATTTAAATGAGTTGATACATAGAAATTTGGTTCAAGTAGTTCATGTCAGTATTGATGGAAGAGCAAAACAATGTCGTGTTCATGATTTAGTGCATGCGATGATCCTTGAATCATTTGAGGATTTATGTTTTTGCAAGACTATCAGTGTTGATGGCCAGTCAACTTTAACTGGAATAACTCGACGCCTATCAGTGACATCTAATTCATATAATTTAATGGAAAGTATTAATAGCTCGCATGTTCGATCACTATTTTATATTGGAAATAATTTATCTGAATCCTTTGTAAGGAAAATTCCTACAAAATACAGGTTGTTGAAGGTGCTTGTCCTTGAGGGTGATCAAAGGCTTGAAATTCCTGAAGATTTGGGAAGTTTGATCTACTTGAAGTATTTGGAATTGAATGACGAACATCAAGAACATTTGAATCTAATTCCAAAATCCATTGGCATGCTCGAGAATCTAGAGACCTTGGATTTAGGATTTAGATATTTCCATAGAATGCCGAAGGAGATTTGCAAGCTTAGAAAGCTTCGCCATCTTATAGGCAAAAAAATTTCTTTGATTGAATTGAAGGATGATATTGGAGGCTTGACAACCTTACAAACTCTGTGTGGGGTTTATTTAAGTGAAGGTGAAGATGATAGTGATAGTGATAGTGATAATAGAGTGATAGATCTAATACAAGAGCTAGGAAAGCTAAAACAACTAAGGAAATTGACCTTGTTCGGTGCTAAGACTAGATATATGAGTGCTCTATCTTCCTCAATCAATGAAATGCAACTACTGGAGAAACTGTATATTGAACATATCTATACATATGGAGTCATTGATATGCATTTGAATTCACCCCCACCAATGCTTCGACATCTTAAAATTGTTGGGAAATTAGAGAAGTTTCCTGAGTGGATTCCGAAACTTCAAAATCTTGTTAAGTTGAAATTCGAAGACTCCTTTCTCAAAGATGATATAATGGAACTAATCAAAAGCATGCCAAACTTGTTGACCCTCTCTCTTAGAGATAATGCTATAAAAGGCGAAAGAAGCTTAGAGATCTCCAAACTCCATCCTACATGGATTGAAAAAGAAAAGAAAAGAAAAAGGTGA 2562 0.3626 MCDTAISLARDHLLPLVRDHLLPLITEATNMIRGIPKEIEDMKDEIESIQQFINKADRLADAEEDNKSHGIRATIKQLIEASFRVEDVIDEYIVNEEQQTPDPGCAAGAILFNTMILRLKVAYTIQSIKTRINEIKVTSEKDRGFQIQSSSEKGSSSSVVNPNSTLLENLRKAPLYMDEKDVVGFEEPKDILIEWLVKGRADLTVVSVVAMGGQGKTTLAKKVFDNSKVVEQFEYRVWITVSQPYSVEGLLRDLLQKLSKQMKKEIPRSIDQMDRDSLVDEVRTTLRQKRYVVVFDDVWNIHFWDEIQLAMIDNKNGSKILITTRNMDVATACKKISFVEVHELKSLTKEQSLDLFNKKTFRDLNGCCPENLIETSSKIIEKCNGLPLAIVVISGLLSCRYRNSLEWYKFSENISLELKGRHSPITKILGHSYHDLSYNLKLCLLYFGIFPEDKILPSKSLICQWIAEGFVKEERRRTLEEVAEGYLNELIHRNLVQVVHVSIDGRAKQCRVHDLVHAMILESFEDLCFCKTISVDGQSTLTGITRRLSVTSNSYNLMESINSSHVRSLFYIGNNLSESFVRKIPTKYRLLKVLVLEGDQRLEIPEDLGSLIYLKYLELNDEHQEHLNLIPKSIGMLENLETLDLGFRYFHRMPKEICKLRKLRHLIGKKISLIELKDDIGGLTTLQTLCGVYLSEGEDDSDSDSDNRVIDLIQELGKLKQLRKLTLFGAKTRYMSALSSSINEMQLLEKLYIEHIYTYGVIDMHLNSPPPMLRHLKIVGKLEKFPEWIPKLQNLVKLKFEDSFLKDDIMELIKSMPNLLTLSLRDNAIKGERSLEISKLHPTWIEKEKKRKR 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01170 853 SUPERFAMILY RNI-like 560 838 - -
Trre6g01170 853 Gene3D Ribonuclease Inhibitor 523 843 IPR032675 -
Trre6g01170 853 CDD RX-CC_like 19 136 IPR038005 -
Trre6g01170 853 PANTHER DISEASE RESISTANCE PROTEIN RP 39 839 IPR044974 GO:0006952
Trre6g01170 853 Gene3D - 433 522 IPR036388 -
Trre6g01170 853 Pfam NB-ARC domain 186 420 IPR002182 GO:0043531
Trre6g01170 853 Coils Coil 39 59 - -
Trre6g01170 853 Gene3D - 15 136 - -
Trre6g01170 853 Gene3D - 346 432 IPR042197 -
Trre6g01170 853 FunFam Probable disease resistance protein At1g63360 433 522 - -
Trre6g01170 853 Pfam Rx N-terminal domain 19 100 IPR041118 -
Trre6g01170 853 Gene3D - 163 340 IPR027417 -
Trre6g01170 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 447 IPR027417 -
Trre6g01170 853 PRINTS Disease resistance protein signature 814 830 - -
Trre6g01170 853 PRINTS Disease resistance protein signature 383 397 - -
Trre6g01170 853 PRINTS Disease resistance protein signature 205 220 - -
Trre6g01170 853 PRINTS Disease resistance protein signature 285 299 - -
Trre6g01170 853 FunFam Probable disease resistance protein At1g61300 167 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01170 Trre-Chr6 9017386 9020312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01170 202 390 WRKY Transcription Factor Family AT5G45050 28.571 1.63e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01170 K13457 - gmx:100819372 724.931