Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01162 ATGTGTGATAATATATGTAAAGATGTATACTCCTGCGCAAAAGATCACTTGCTTCCATTAGCTAGTGATCATTTGCTTCCAATTTTAAAGGAATCAATCAACATGATAAGGGGTGTCCCATTAGAAATTGCACGCATGAAACATCAACTTGAAAGGATTGAAGAATTCATCAGCATTGCAGACAGAGTGGCTGATGCTGAAGAAAACAACAAAAGTCATGGAACCAGAGGAATGATTAAGGAACTAATAGAAGCATCTTTTCAAATAGAAGATGTCGTTGAAGAATATATGATCCGCAAGGAACAACAACTTCCAGATCCTGGATGTGCTGCTTTTGCAGCTAACTATGTCAAAACTACGTGTCTTCGTCTCCAAATTGCCTACAAGATTCAGAACATCAAATCTCGAATTGATGAAATAAAAGAAACAAGTACTGAAAAAGATAATGGCTTCCCACAAATCCAATCTTCTTGGGAACAAAAACCAAGCAGTTGCGAAGTTTTATACAACCTTCGCATGGCTCCATTTCACATTGATGAAGCCGATGTTGTAGGATTTGAAGAGCCAAAGAAAATATTGATTGATTGGTTAGTAGAAGGAAGAGCAGGGCGGACAGTCGTCTCCATTGTTGCAATGGGAGGTCAGGGAAAAACCACTTTGGCAAATAATGTTTTTGACAGCAACATGGTCATCAAACATTTTGACTGTCGTGTATGGATCACAGTTTCTCAATCATACAAAGCAGAAGGAACGTTGAAGAAAATATTGCAAGAGTTATACAAACTGAAGGGACAAGTTCCTTCTCAGAGTATTGATCAAATGGATCGAGACGCATTAGTTGATGAAGTGAAAAACTGCTTGCATAAAAAAAGGTATGTTATCGTGTTTGATGATGTATGGAACATACATTTTTGGGATGAAATTGAATTTGCTATGATTGATAACAAAAATGGTTCTAAGATATTAATAACAACAAGGAATGTGGAAGTTGTGAATGCTTGTAAGGTATCTTCTTTTGTTGAAGTGCATAATTTGAAACCTTTAACTAAAGAAAAATCTTTGGAATTGTTCAATAAAAAGGCATTTCATAATTTGGAAGGTTGTTGCCCAGAAAATCTTATTGATATATCTTCCAAAATAATTGAAAAATGCAATGGATTACCACTAGCAATTGTAGTCATAGGTGGTCTTTTATCTCGCAAAGATAGAAAACCAGTTGAATGGTATGAGTTTAGTGAAAATATAAATCCAAAGTTAAAGGAAGATTCCAAGATAAAACAAATTTTAGCTCTTAGTTACCATGATTTGCCTTACAACCTTAAGTCATGTTTCTTATATTTTGGATTATATCCTGAGGACTTTATAGTTCCTTCGAATTTATTGACTCGACAATGGATGGCTGAAGGATTCATAAAAGAAGATATAGGAAGCACATTGGAAGAGGTTGCAGAAGAATATTTAACAGAGTTGATTCGTAGAAATTTGGTGCAAGTTGTTTCAATTAGTATTGATGGAAGAGCAAAGAGTTGTCGTGTTCATGATCTTTTGCAAATCAAACATACACTATATATATCATGA 1578 0.3485 MCDNICKDVYSCAKDHLLPLASDHLLPILKESINMIRGVPLEIARMKHQLERIEEFISIADRVADAEENNKSHGTRGMIKELIEASFQIEDVVEEYMIRKEQQLPDPGCAAFAANYVKTTCLRLQIAYKIQNIKSRIDEIKETSTEKDNGFPQIQSSWEQKPSSCEVLYNLRMAPFHIDEADVVGFEEPKKILIDWLVEGRAGRTVVSIVAMGGQGKTTLANNVFDSNMVIKHFDCRVWITVSQSYKAEGTLKKILQELYKLKGQVPSQSIDQMDRDALVDEVKNCLHKKRYVIVFDDVWNIHFWDEIEFAMIDNKNGSKILITTRNVEVVNACKVSSFVEVHNLKPLTKEKSLELFNKKAFHNLEGCCPENLIDISSKIIEKCNGLPLAIVVIGGLLSRKDRKPVEWYEFSENINPKLKEDSKIKQILALSYHDLPYNLKSCFLYFGLYPEDFIVPSNLLTRQWMAEGFIKEDIGSTLEEVAEEYLTELIRRNLVQVVSISIDGRAKSCRVHDLLQIKHTLYIS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01162 525 FunFam Probable disease resistance protein At1g63360 433 518 - -
Trre6g01162 525 Gene3D - 174 342 IPR027417 -
Trre6g01162 525 FunFam Probable disease resistance protein At1g61300 170 338 - -
Trre6g01162 525 Pfam Rx N-terminal domain 24 103 IPR041118 -
Trre6g01162 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 447 IPR027417 -
Trre6g01162 525 Pfam NB-ARC domain 189 427 IPR002182 GO:0043531
Trre6g01162 525 CDD RX-CC_like 23 142 IPR038005 -
Trre6g01162 525 Gene3D - 347 437 IPR042197 -
Trre6g01162 525 Gene3D - 438 519 IPR036388 -
Trre6g01162 525 PRINTS Disease resistance protein signature 206 221 - -
Trre6g01162 525 PRINTS Disease resistance protein signature 384 398 - -
Trre6g01162 525 PRINTS Disease resistance protein signature 286 300 - -
Trre6g01162 525 Gene3D - 20 138 - -
Trre6g01162 525 PANTHER DISEASE RESISTANCE PROTEIN RP 45 516 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01162 Trre-Chr6 8973363 8974940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01162 207 405 WRKY Transcription Factor Family AT5G45050 28.141 1.32e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01162 K13457 - mtr:25489074 534.258