Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01161 ATGCTTAGGGGTGTCCCAAAAGAGATTGCAGAAATGAAAAATGAACTTGAAAACATTGAAGAATTCATCAACAAAGCAGATAGAATGGCTGATGATGTTGAAGATGACAACACAAGACAAGGAATCAAAGCAAGGATCAAGCAGCTCATAGAAGCATCTTTTGGCATACAAGATGTCATTGATGAATATATTATCTGTGAGGAAAAACCTCATGGATGTGTTGGTGGTGGTGCTAACTTGGCCAAAACTATGATTCTTCGTCACCGAATAGCCAACAAGATTCGGAACATTAAATCTCGAATTAGTGAAATGAATGATGCAAGAGGAATGGATCATAGCTTCGAAATCAAATCTTCTTTGGAGCAAGGGTCAAGTAGTTCTACAAGAAACTTAAACGGCGCATTATTGCAGAATCTTCGAAAGGCTCCATTTTACATGGATGAAGCTGATATTGTAGGCTTTCAAATGCCAAGAGACATGTTGATTGATTGGTTGGTTGAGGGAAGAGCAGAGCGCACAATCGTCTCCGTTGTTGGATTGGGAGGACAGGGAAAAACTACTCTAGCCAAAAAAGTTTTTGACAACAACAAGATTGTTAAACACTTTGATTGTCATGTATGGATCAAAGTGTCTCAATCATACAAAATAGAAGGATTGCTTAGGGACATGTTGCACAAGTTTTACGAACAACAGGGAGCGAATCCTCCACCGAATATTCATCAAATGAATCGATCGGTCTTAGTTGATGAAGTGAGAAAATACTTGAAGGAAAAAAGGTATGTTATTGTTTTTGATGATGTATGGAACTTACATTTTTGGGATGATATCGAATTTGCTATGATTGATAACAAAATGGGTTGTAAGATATTAATCACAACAAGGGATATAAATGTTTTGAATGCATGTAAGAAATCTACTTTTGTTGAAGTGTATGAACTTAAATCTTTAACTGAAGAACAATCTTTGGAGTTGTTCAATAAGAAGGCATTTCATGACTTGAACGGACATTGTCCGGAAAATCTTATTGATATATCTTCCAAAATTGTTGAAAAATGTAATGGGTTACCACTAGCAATTGTAGTCGTTGGTGGTATTTTATCTTGCAAAGATAGAAATGCATTAGAATGGAATAAGTTTAGTGAAAATCTAAATTCAGAGTTAAAGGAAGATTCCATGATAAAAAAAGTTGTATGTCTTAGTTACCATGATTTGTCTTACAATCTCAAGTCATGTTTGTTGTATTTTGGATTATATCCCGAAGGGTGTATAATTCATTCAAAGATATTGATACGACAATGGATGGCTGAAAGGTTCCTAAAAGTGGATATGGAAGAAACTCTGGAGGAGGTTGCAGAAGGATATTTAGCAGAATTGATCAACAGAAGTTTGGTGCAAGTAGTTTCAATCAGTATTGATGGAAGAGCAAAAAGTTGTTGTGTTCATGATCTAGTGTATGCAATGATCCTTGAAAAATGCGAGGATTTATGTTTTTTCAAGAATATTAACGAGGATGACCAATCATCTTTAAATGGAATGGTTCGACGCCTATCAATAGCAACCAAATTTGATAATTTAATGGAAAATGTTGAAAACAAACGCATTCGGTCACTTCTGGTCAAAACATTAAATGAAGCCTTTGCAAGAAGAATCCCTGCAAAATACCGGCGGTTGAGCGTGCTTGATTTGGAGCATGTTGGATTGCGTGATGTTCCTAAAGATTTTGGAAGTTTGAGCCACTTAAAGTATTTTAGGTTCAGGGAGAACTTTCGAGGAGACCGTTGTGTTCTTCCAAAAGCCTTTGGCATGCTTGAGAATCTAGAAACCTTGGATTTAACCCGTACAAGTTTCCATCCTATGCCAAAGGAGATATGCAAGCTTAGAAAGCTTCGCCATTTTCTAGGCTACAATATGTCTTTGATTCAATTGAAGGATGGTATTGGAGGTATGACATCCCTACAAACTCTACGCGATGTTTATTTAGATGGTGGAGAGAATGATGTAGTAAAGCTAATCCAAGAGCTCGGGAAGCTAAAGCAGCTAAAGGAATTGGTCTTGATCGGTGTTAGGAGTAGTTACATGAGTGCTATATCTTCCTCAATCAATGAGATGCAACAAATGGAGAAACTATATATTCGCGCAAACGGATATAACACAGTCATTGATATGGATTTGAGTTCACCTCCTCCTATGCTTCGACATCTTACTCTTGAGGGGAAGTTAGAGATGTTGCCTGAGTGGATTCCAAAACTTCAAAATCTTGTTAAGTTGAAACTTAAGTATTCCCAGCTAACAGATGATAAAATGAAATTACTCAAAAGCATGCCAAACTTGTTGTCCCTCTCTCTGAGGGAAAATGCTTATGAAGCCGAACGGTTACATTTTCAAGATGGATGGTTTAAGAATTTGAAGCATCTATATCTTGAAGATTTGGAAACCTTGAATTACATCATTATTGACGAAGGCGCGTTGCGTTCCCTAGAAAAGCTACAATTAACCTTCATCCGCCATCTCAAGACATTACCAACCGGCATTCAACACTTAAAAAAGCTTGAAGTTCTGAGTATCAAGCAAATGAGCCACTTATTTAGTGAAGCCTTTTTCTTCGATGAAGGAAAAGCGCATTGGAGCTTCAAGCATGTGCCCGTCGTAGACATTTAA 2658 0.3713 MLRGVPKEIAEMKNELENIEEFINKADRMADDVEDDNTRQGIKARIKQLIEASFGIQDVIDEYIICEEKPHGCVGGGANLAKTMILRHRIANKIRNIKSRISEMNDARGMDHSFEIKSSLEQGSSSSTRNLNGALLQNLRKAPFYMDEADIVGFQMPRDMLIDWLVEGRAERTIVSVVGLGGQGKTTLAKKVFDNNKIVKHFDCHVWIKVSQSYKIEGLLRDMLHKFYEQQGANPPPNIHQMNRSVLVDEVRKYLKEKRYVIVFDDVWNLHFWDDIEFAMIDNKMGCKILITTRDINVLNACKKSTFVEVYELKSLTEEQSLELFNKKAFHDLNGHCPENLIDISSKIVEKCNGLPLAIVVVGGILSCKDRNALEWNKFSENLNSELKEDSMIKKVVCLSYHDLSYNLKSCLLYFGLYPEGCIIHSKILIRQWMAERFLKVDMEETLEEVAEGYLAELINRSLVQVVSISIDGRAKSCCVHDLVYAMILEKCEDLCFFKNINEDDQSSLNGMVRRLSIATKFDNLMENVENKRIRSLLVKTLNEAFARRIPAKYRRLSVLDLEHVGLRDVPKDFGSLSHLKYFRFRENFRGDRCVLPKAFGMLENLETLDLTRTSFHPMPKEICKLRKLRHFLGYNMSLIQLKDGIGGMTSLQTLRDVYLDGGENDVVKLIQELGKLKQLKELVLIGVRSSYMSAISSSINEMQQMEKLYIRANGYNTVIDMDLSSPPPMLRHLTLEGKLEMLPEWIPKLQNLVKLKLKYSQLTDDKMKLLKSMPNLLSLSLRENAYEAERLHFQDGWFKNLKHLYLEDLETLNYIIIDEGALRSLEKLQLTFIRHLKTLPTGIQHLKKLEVLSIKQMSHLFSEAFFFDEGKAHWSFKHVPVVDI 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01161 885 FunFam Probable disease resistance protein At1g63360 401 490 - -
Trre6g01161 885 SUPERFAMILY L domain-like 480 861 - -
Trre6g01161 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 415 IPR027417 -
Trre6g01161 885 Pfam Rx N-terminal domain 2 71 IPR041118 -
Trre6g01161 885 Gene3D - 146 310 IPR027417 -
Trre6g01161 885 PANTHER DISEASE RESISTANCE PROTEIN RP 11 826 IPR044974 GO:0006952
Trre6g01161 885 Gene3D - 1 103 - -
Trre6g01161 885 PRINTS Disease resistance protein signature 352 366 - -
Trre6g01161 885 PRINTS Disease resistance protein signature 254 268 - -
Trre6g01161 885 PRINTS Disease resistance protein signature 174 189 - -
Trre6g01161 885 PRINTS Disease resistance protein signature 845 861 - -
Trre6g01161 885 FunFam Probable disease resistance protein At1g61300 136 306 - -
Trre6g01161 885 Gene3D - 402 492 IPR036388 -
Trre6g01161 885 Gene3D Ribonuclease Inhibitor 515 866 IPR032675 -
Trre6g01161 885 Pfam NB-ARC domain 159 394 IPR002182 GO:0043531
Trre6g01161 885 Coils Coil 9 36 - -
Trre6g01161 885 CDD RX-CC_like 1 104 IPR038005 -
Trre6g01161 885 Gene3D - 315 401 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01161 Trre-Chr6 8954884 8957541 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01161 175 371 WRKY Transcription Factor Family AT5G45050 31.034 7.08e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01161 K13457 - gmx:100819372 795.423