Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01159 ATGGTTAATCTAGCTAGTTACTCTAAACAAGCCCCTGAACATGTATTATCTAGCTTAATACCAATTCTCATTGAGATTCTTGGTCATATTGACATTGTAAATGATTCGGTTCCGGATTTACTTCAAGAGGCTGCTGGTTATTGCTTGAAGTGCATTGCTTGTAGAGGTGATGGTAGTTTGGCAATTGAAATGGGTCGACATGGTGTTTCATATATTTTGATAAGGTTGTTGCCTCGTGCCGAGGGAATGATGCAGAAATCTCTGATAAAATGTTTAACGGTTGTTGTTAGTTTTTGTAGTACAAGTAGGACAGTTGTTGGAGCTAACGGTGGTTTAGAAACTATAATCAGTTTGTTGATTACTTGTAGCGATGATGTTAGATTGTATTTGTTAGAGATTTTGAGTGCATTGGCGCTTCTGAGGGAAGTTAGGAAGGAACTTATTGGATTAGGATCGCTTTGTTTTATTGTAGAAGCTGCTGGTGTTGGCAGCATGGTTTCTAGGGAAAGGGCATGTCAAGCAATTGGATTGATTGGAGTTACGAAAGAAGCTAGGTGTACACTTGTTGAATTGGGAGTCATACCCGTGCTTGTTGAGTTGATTCGCGTAGGAGATAACACCATGAAACTTGTTGCCGGTAATAGTCTTGGTGTGGTAGCTCGTCTTGATTACATTACACATGTTGTTCAAGCCGGGGCTATACCTCTTTATGCCGAGCTTCTTAAAGGACCTGATGTTTCTTCTGGTAAGGAGATAACTAAGAATATGTTTTGTATATTGGCTCTTGAAGAAGCGAATGCCGTTGAAATTGTTGGTCACTTGGTTAGAATTCTTAGAGAAGATGATGGTGAAGCTAAAGCAGCAGCTGCTGATGTGATTTGGGATCTGTCTGCAAACCGCAACACAATTTCTGTGATTCGGGATTCAGGTGTGATCACTATCCTTATCGAGCTTTTGAGCCATGCGAGTGAGGAAGTAAAGCTAAATATTTCTGGGGTATTTTCTCAGCTGAGCTATAGTGAAAGCGGTAGAATGGCCCTTGAAGATGCTGGTGCAATTCCGATTCTCATTGACTTGCTAGATGAGGAGACTGAGGAACTACGTGATAATGTGGTGGAGTCACTTTCTAATATTCATGAAGATCCATTATACTGTGATAGATTATCTGATCTTGTTAATAGTCCTTCGTTTAGAAATATGCAGAATCAACTATATAGTAATCGTGCATCGAACAGGTTTATGCCTGGGTATGTGCCTAGAGCTTTACGTACAATTAGTGATGAGGAAATCATTTGGATCCAAAATCATGTTTATCATCTTACAGGAAAATGCTTGAATTTGTAG 1344 0.3973 MVNLASYSKQAPEHVLSSLIPILIEILGHIDIVNDSVPDLLQEAAGYCLKCIACRGDGSLAIEMGRHGVSYILIRLLPRAEGMMQKSLIKCLTVVVSFCSTSRTVVGANGGLETIISLLITCSDDVRLYLLEILSALALLREVRKELIGLGSLCFIVEAAGVGSMVSRERACQAIGLIGVTKEARCTLVELGVIPVLVELIRVGDNTMKLVAGNSLGVVARLDYITHVVQAGAIPLYAELLKGPDVSSGKEITKNMFCILALEEANAVEIVGHLVRILREDDGEAKAAAADVIWDLSANRNTISVIRDSGVITILIELLSHASEEVKLNISGVFSQLSYSESGRMALEDAGAIPILIDLLDEETEELRDNVVESLSNIHEDPLYCDRLSDLVNSPSFRNMQNQLYSNRASNRFMPGYVPRALRTISDEEIIWIQNHVYHLTGKCLNL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01159 447 Gene3D - 223 404 IPR011989 -
Trre6g01159 447 SMART arm_5 181 221 IPR000225 GO:0005515
Trre6g01159 447 SMART arm_5 299 339 IPR000225 GO:0005515
Trre6g01159 447 SMART arm_5 340 380 IPR000225 GO:0005515
Trre6g01159 447 SMART arm_5 99 139 IPR000225 GO:0005515
Trre6g01159 447 SMART arm_5 255 298 IPR000225 GO:0005515
Trre6g01159 447 SUPERFAMILY ARM repeat 30 384 IPR016024 -
Trre6g01159 447 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 29 391 - -
Trre6g01159 447 Gene3D - 3 222 IPR011989 -
Trre6g01159 447 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01159 Trre-Chr6 8929513 8931048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01159 102 349 U-box Gene Family AT2G28830 26.592 2.00e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01159 - - tpra:123912979 619.387