Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01156 ATGTCACATAGTGGAATGGTGGTCAGCCCCCCATCATCTAGTGGTTTAGGACATCTTTCTTTTAAGGAGGCAAGCGAAGATTCGACTTCCCTCAGGAGTAGGAAACTCTCATGCTCCATCACCAATTCACCAACGCAAAGGTGGAATACTATGGATCACCAATTGCCATATGACAAATCAAGCTTGAAGTCAATAGAGAAAGCCATAATTAACTCTGAAGTTGTTATGACTCCAAATAATGATGGAGAAGTGATACGGTTGAGTATCCCTCAGTTGACATCTGAAATTTGGTTCATATTCAATCTTCATTATTGTTTGGTAACTCTACAATCTTCGTTGAGATTCAATCAAGCTTCAGATTCAATCTTCTTGAAATTCAGAAAGAGCTCGAAAAACAAGATAACCTTAGAAGAAAGAATGAGGAGTGGATCAAGAAAGAAATGGAGAGAAGATCATGAAAGCAGAAAGGAAGAAGAGAGATTGATGCGTGTAGAGGAAGGAACAAAACGAGAGGAAAAACGTGAAATTGAACGAAGGGAAAAGTATTTGCTGAAAGAAAATTTAAAAGCCGAGAGAATGAGGCAAAAAGAAGAGCTTCGGAAAGAGAAAGAGACAGGGAGAAGGAAAACTGCCCTTGAGATGGCATATGCCCGTAAAATAGCTAGGGAATCCATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTAGCTGCTTCAAGCAAGGGGCTTTCCTCTATTATCATTCTTGATTTGGATACTTTGCAAAACATTGAATCATTTAGGGGTTCACTGTGTATTTTCCCACCTGAGAATGTAAAGCTAAGAAAACCATTTGCTTTCCAACCGTGGATCAACTCAGAAGAGAATGTTGGCAACCTTCTCATGTGTATGGAGCTTGTTTGTTGGATCAACAGTTATGTGGATGCACTGATTTTCTTCTCTACATATTGCACCAATTGTTTATACTTGATTTGGCTCATGGCTTGA 993 0.3938 MSHSGMVVSPPSSSGLGHLSFKEASEDSTSLRSRKLSCSITNSPTQRWNTMDHQLPYDKSSLKSIEKAIINSEVVMTPNNDGEVIRLSIPQLTSEIWFIFNLHYCLVTLQSSLRFNQASDSIFLKFRKSSKNKITLEERMRSGSRKKWREDHESRKEEERLMRVEEGTKREEKREIERREKYLLKENLKAERMRQKEELRKEKETGRRKTALEMAYARKIARESMELIEDEQLEMMELAASSKGLSSIIILDLDTLQNIESFRGSLCIFPPENVKLRKPFAFQPWINSEENVGNLLMCMELVCWINSYVDALIFFSTYCTNCLYLIWLMA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01156 330 Pfam Ribosome recycling factor 56 95 IPR023584 -
Trre6g01156 330 SUPERFAMILY Ribosome recycling factor, RRF 56 95 IPR036191 -
Trre6g01156 330 Gene3D - 54 95 - -
Trre6g01156 330 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 137 302 IPR044977 GO:0006357
Trre6g01156 330 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01156 Trre-Chr6 8903396 8909248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01156 155 298 Homeobox Transcription Factor Family AT5G44180 58.333 8.54e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01156 - - adu:107480767 206.453