Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01154 ATGATTCCAATTATGTTGTTGATAATTCTCATTGTCCTTCCAACACTTTCATGGTCACAAGCTGTAGTAGCTGAAGCCACTGAAGCACAAGCTCTTTTAAAATGGAAAAATAGCTTTGATAACCAAAGTCAATCACTCTTATCAACTTGGAAAAATACCACAAATCCATGTGATGATAAATGGAAAGGAATTAATTGTGATAAATCCAATTCCATTTCTACCATAAACCTTGAAAGTTTTGGAGTAATAGGTACACTTCACTCTCTCACTTTCTCTTCATTACCAAACCTTATAACCTTAAATATCTACAATAACAACTTTTATGGAACCATTCCACCTCAAATTGGTAACATGTCTAAAATAAATGTCTTGAATTTTTCTTATAACTCTTTTGATGGTTCCATTCCTCAAGAAATGTGGACATTAAGGACTTTAAAAGGCCTTGATCTTCTTAGTTGTAAATTGAGTGGAGAAATTTCTAATTCCATAGGAAATTTAACCAACCTATCATATCTAGATTTAGGAATCAATCATTTTTCTAGTGGTCCTATTCCTCCTGAGATTGGAAAACTGAACAAATTACGGTACCTAACAATTCGAGAAAATAATCGAATTGGTTCCATTCCACAAGAAATTTGTTTGTTGACAAATCTTATTTATCTCGATTTGGCAGCAAACTCTCTATCTGGTGTTATCCCTGAAACCATAAGCAACCTTAGCAAATTAGAACAACTTATCCTTAATGATAACAGAAAGTTGTCTGGGACAATTCCACACTCCTTGTGGAACATGTCTAGCTTGAGCTTGATCTACCTGTATAACAATAGTCTTTCTGGATCGATACCGGATTCTGTAGAAAACTTGCTTAATGTGGGTGTACTTGCACTTGATTCCAATCAACTTTCTGGATCCATTCCTTCCACAATTGGAAACTTGAAAAACATCGTTCGTTTGTTTTTAGGAATGAATCGTCTTTCTGGATTGATTCCTGCTTCTATAGGAAATTTGATCAATTTGAAAGTTCTTAGTGTCCAAGTAAACAATCTCACTGGTACTATTCCAGCTACAATTGGGAATTTGAAGCAGCTCATTGTCTTTGAAGTAGCTACCAATAAACTTCATGGTAGAATTCCAAATGGACTTTATAACATTACTGATTGGGAAGCCTTTATTGTGTCTGAGAATGATTTTGTTGGGCATTTGCCGTCGCAAATATGCTCTGGTGGGAAATTAACTCTCTTGAATGCTGATCACAACCGTTTCACCGGTCCGATACCAACAAGTTTGAAAGATTGCTCTACCATTCAAAGAATTAGAATCGAGGGAAATTCAATAGAAGGTGATTTAGCACAAGATTTTGGTGTGTATCCGAAGTTGAAATACGTTGATATGAGTGACAATAAACTTCATGGACACATTTCACCAAACTGGGGGAAGTGTCTTGATCTTAATACTTTCCATATATCCAACAATAATGTTTCTGGTGGTATACCATTGGAACTTATTGTCTTACCAAACCTAGGTAGGCTTCATCTTTCTTCTAATCAATTGTCTGGGAAACTTCCAAAGGAATTAGGAAACATGAAATCATTGTTTGAACTCGACTTAAGTAACAATCGTTTTACGGATAACATCCCAAAAGAAATTGGATTGTTGCAAATACTTCGAGAGTTGGATCTCGGAGGAAACGAGTTGAGTGGAAAGATACCGAATGAAGTTGCGGAGCTACCGATACTACAAAAGTTGAATTTGAGCAGAAACAAAATTGAAGGAAGCATTCCATCTAAGTTTGGTTCAGATTTGGCCATTCTTGATCTTAGTGGCAATTTTTTGAATGGAAAAATACCAACAGCTCTTGAAAATTTGGTGCAGTTGTCAATGTTGAATCTCTCTCACAATATGCTTTCAGGAACCATTCCTCAAAATTTTAAAAGGAATTTGGATTTTGTTAACATATCGGACAACCGGTTAGAAGGGTCACTTCCGAATATTCCGGCTTTTCTTAATGCTTCATTTGAGTCAGTCAAAAATAACAAAGGCTTGTGTGGAAATATCACAGGATTGGATCCTTGTGCAACAAACCATATTATCCATAGTAGAAAGAGAAAAAATGTCCTCCGATCGGTACTCATTGCTTTAGGAGCTCTAATAGTTGTGTTGTGTGGGGTCGGAATTTCGATGTATGTTTTGTGTCGGAGAAATAAATCAAATGAAGAAAGCCAAACTGAAGAAGCGCTACAAAAGGAAGTACTATTTTCAATTTGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCGACTGAGAATTTCGACGACAAATATCTGATTGGAGTAGGAAGTCAAGGAAATGTTTACAAGGCAGAGTTGTCTGAAGGTATGGTGGTTGCTGTGAAGAAACTTCATTTAGTAACAGATGAAGAAATGTCAACTTTCAGTTCAAAGTCTTTTATGAGTGAGATTGAAACTTTGACAGGAATCAAACACAGGAACATCATAAAGCTTTATGGATTTTGCTCACATTCTAAGTTCTCATTTTTAGTTTATAAGTTCTTGGAAGGTGGAAGCTTGGATCATATACTAAACAATGACACACAAGCCATTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTACTTGCATCATGATTGCTCACCTCCTATTATTCATCGCGATATATCAAGCAAGAATGTTCTTCTTAATCTTGACTATGAAGCTCATCTGTCTGACTTCGGGACCGCGAAGTTTCTAAAGCCTGGTTTACTCAGCTGGACTCAATTTGCAGGCACTTTTGGCTATGCAGCTCCAGAGTTGGCACAAACAATGGAAGTGAATGAGAAATGTGATGTATACAGCTTTGGAGTACTTGCTTTGGAAATCATAGTTGGAAAACATCCAGGAGATCTCATTTCATTATTTTTATCACCATCTACAAGGCCAATGGCTAATGATATGTTGTTGATAGATGTTTTAGATCAACGGCCTCAACAAGTTACGAAACCAATTGACGAGGAGGTGATGTTGATTACCAGGTTGGCATTTGCTTGCTTGAATCAAAATCCGCGTTCTCGTCCAACCATGGATCAAGTATCCAAGATGCTTGCAGCAGGAAAATCACCTTTGGAGAACCAACTTTCCATCATTAGACTAGGAGAGCTTCAATAA 3198 0.3671 MIPIMLLIILIVLPTLSWSQAVVAEATEAQALLKWKNSFDNQSQSLLSTWKNTTNPCDDKWKGINCDKSNSISTINLESFGVIGTLHSLTFSSLPNLITLNIYNNNFYGTIPPQIGNMSKINVLNFSYNSFDGSIPQEMWTLRTLKGLDLLSCKLSGEISNSIGNLTNLSYLDLGINHFSSGPIPPEIGKLNKLRYLTIRENNRIGSIPQEICLLTNLIYLDLAANSLSGVIPETISNLSKLEQLILNDNRKLSGTIPHSLWNMSSLSLIYLYNNSLSGSIPDSVENLLNVGVLALDSNQLSGSIPSTIGNLKNIVRLFLGMNRLSGLIPASIGNLINLKVLSVQVNNLTGTIPATIGNLKQLIVFEVATNKLHGRIPNGLYNITDWEAFIVSENDFVGHLPSQICSGGKLTLLNADHNRFTGPIPTSLKDCSTIQRIRIEGNSIEGDLAQDFGVYPKLKYVDMSDNKLHGHISPNWGKCLDLNTFHISNNNVSGGIPLELIVLPNLGRLHLSSNQLSGKLPKELGNMKSLFELDLSNNRFTDNIPKEIGLLQILRELDLGGNELSGKIPNEVAELPILQKLNLSRNKIEGSIPSKFGSDLAILDLSGNFLNGKIPTALENLVQLSMLNLSHNMLSGTIPQNFKRNLDFVNISDNRLEGSLPNIPAFLNASFESVKNNKGLCGNITGLDPCATNHIIHSRKRKNVLRSVLIALGALIVVLCGVGISMYVLCRRNKSNEESQTEEALQKEVLFSIWSHDGKMMFENIIEATENFDDKYLIGVGSQGNVYKAELSEGMVVAVKKLHLVTDEEMSTFSSKSFMSEIETLTGIKHRNIIKLYGFCSHSKFSFLVYKFLEGGSLDHILNNDTQAIAFDWEKRVNVVKGVANALSYLHHDCSPPIIHRDISSKNVLLNLDYEAHLSDFGTAKFLKPGLLSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIIVGKHPGDLISLFLSPSTRPMANDMLLIDVLDQRPQQVTKPIDEEVMLITRLAFACLNQNPRSRPTMDQVSKMLAAGKSPLENQLSIIRLGELQ 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01154 1065 SMART LRR_typ_2 215 238 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 336 360 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 576 600 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 528 552 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 264 288 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 312 335 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 504 527 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 166 191 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 622 645 IPR003591 -
Trre6g01154 1065 SMART LRR_typ_2 94 118 IPR003591 -
Trre6g01154 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 406 - -
Trre6g01154 1065 FunFam MDIS1-interacting receptor like kinase 2 854 1051 - -
Trre6g01154 1065 PANTHER LEUCINE RICH REPEAT KINASE 2 333 1049 - -
Trre6g01154 1065 Gene3D Ribonuclease Inhibitor 143 216 IPR032675 -
Trre6g01154 1065 Gene3D Ribonuclease Inhibitor 27 142 IPR032675 -
Trre6g01154 1065 FunFam Leucine-rich repeat receptor protein kinase MSP1 735 853 - -
Trre6g01154 1065 FunFam Nuclear pore complex protein NUP107 25 183 - -
Trre6g01154 1065 Gene3D Ribonuclease Inhibitor 220 386 IPR032675 -
Trre6g01154 1065 Gene3D Ribonuclease Inhibitor 387 694 IPR032675 -
Trre6g01154 1065 Pfam Leucine rich repeat 193 251 IPR001611 GO:0005515
Trre6g01154 1065 SUPERFAMILY Protein kinase-like (PK-like) 756 1045 IPR011009 -
Trre6g01154 1065 SUPERFAMILY RNI-like 347 664 - -
Trre6g01154 1065 ProSitePatterns Tyrosine protein kinases specific active-site signature. 899 911 IPR008266 GO:0004672|GO:0006468
Trre6g01154 1065 Pfam Protein kinase domain 775 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01154 1065 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre6g01154 1065 ProSiteProfiles Leucine-rich repeat profile. 530 552 IPR001611 GO:0005515
Trre6g01154 1065 Pfam Leucine Rich Repeat 555 573 IPR001611 GO:0005515
Trre6g01154 1065 ProSiteProfiles Protein kinase domain profile. 773 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g01154 1065 Gene3D Transferase(Phosphotransferase) domain 1 854 1057 - -
Trre6g01154 1065 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 407 695 - -
Trre6g01154 1065 SUPERFAMILY RNI-like 75 383 - -
Trre6g01154 1065 Gene3D Phosphorylase Kinase; domain 1 731 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01154 Trre-Chr6 8897782 8901067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01154 3 947 Receptor kinase-like Gene Family AT4G08850 43.051 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre6g01154 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01154 - - gmx:100812486 1326.61