Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01149 ATGACTAAACTTGGCCATCTTGAAGAGTCCCTTTTGAATGGTGAACCTAGTGTAAACAAGGATTCTGATGCCAAAAACATACTAAAAACCTGTTATTCAAATGCTGGATTTTTCAGCCTTCTTACTTTCTCATGGATGAGTCCACTAATAACGTTAGGCAGTAAAAGGACTTTAGACCATGAAGACCTTCCACTGCTTTCTAACAATGACAGTGCCAATGGAAGTTTTTCAACTTTTAAAAAAAAGCTTGAGTTGGAGTGTGGTAATGTTAGGAATTTGACCACTATTAACCTCACCAAGGTGTTGTTCTTCTCAACTTGGCACGGGATTCTTCTATCTGGCGTTTTTGCATTCTTGTTCACATGTGCTTCTTATGTTGGACCCTACCTTATAGACAATTTTGTTCAATACCTCAATGATGAAAACAAGGCTAAAAGGGAAGGCTATATTTTGGCTATGACGTTTGTTGCGGCAAATCTTGTCGACGCTCTTTTTCAGAAACACTTTATATTTAAGATCCAACAGGTTGGTGTTAGGATGCAATCAATGTTGGTATCAATGATCTATGCTAAAGGTTTGACTCTTTCATGTCAATCGAAAGCGGAACACAGCAGCGGCGAAATTATCAACTTATTGACGGTTGATGCTGAAAGGATAGGTGAATTTTGTTGGTACATGCATGATATATGGATGGCAGTTCTTCAAGTTTCTTTGGCTTTGTTTATTCTGCATAGAACTGTAGGGGTTGCTTCAGTAGCTACTTTTGCCGCCACCGTAGTTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAGAGGTTCCAAGGTAAGTTAATGGAATTCAAAGATAAAAGAATGAAGGCGACATCTGAGATTCTAATGAACATGAGGATTCTTAAACTTCAAACATGGGAGATGAAATTCTTATCAAAGATTATCCAGATTAGGAAGTTAGAGGAGATTTGGCTAAAGAAATTTCTTGTTGGTACAGCACTTGCTAAATTTATCTTCTTTAATGCCCCAACGTTTGTTGCTGTGGTTACTTTTGGTACTTGTGTTCTTTTAGGCATTCCACTTGAATCAGGAAAGATCTTATCTGCTCTTGCAACATTCAGAATTCTTCAAATGCCTATTTTTTGTCTTCCCGACACAATTTCAGTGATTGCAGAAACCAAGGTTTCTGTAGATAGGATTGCTGCGTTTCTTCGTCTAGATGATTTGCAGGCCGATGTAGTGGAAAAGCTTCCACGCAATAGTTCTGATATAGCAATTGAAATAGAAGATGGAAATTTCAGTTGGGATCTATCTTCTGTCGATACAACATTGAAAAACATAAATATTAAAGTTTTTCATGGAATGAGGGTTGCTGTTTGTGGCACGGTTGGATCAGGAAAGTCTAGTTTACTTACTTGTATAATAGGGGAAATGCCAAAGCTATCTGGAACTTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATTGCCGTGGATACAGAGTGGGAAGATAGAAGAAAATATACTCTTTGGTAGAGAAATGGATAGGGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCATTGAAGAAAGACTTAGAGGTTTTACCATTTGGTGATCAGACAATTATTGGAGAGAAGGGGATAAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTGTATCAAGATGCTGATATATATCTGCTCGACGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGTTTGCTTGACCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGATGCTGATTTGATACTGGTCATGAAAGACGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTTACGTCGGGAACAGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCATTGTCTTCAGTTAAGTCATTAGAGAGAAGGAATACATTTAAAGAATCTAGTATTTCCAGGGAAGACACAGGTTTATTAAGTGATTTTGAACTTGAGCAAGAAGTGGAAAACATAGATGACCGAAACGGCAAGTTAGATGACACAGTTGATCCGAAAGGCCAACTTGTTCAAGATGAAGAACGGGAAAAGGGTACAATTGGACTTAAAGTGTTCTGGACATACATCACAATAGCTTATGGAGGAGCTCTTGTACCGTTTATATTTCTTTCACAGATACTCACTGTGGTTTTACAGATTGCAAGCAATTATTGGATGGCATTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGATATTGGAAGCCTTACTCTTATGGTTGTCTATGTTTCTTTATCAATTGGAAGTTCCTTTGCCACCCTTGCCCGAACAGTTCTTGCAGTGATATCTGGATACAAGACTGCCACCTTGCTCTTCAATCAAATGCATTTCAGCTTTATCCGAGCACCGATGTCTTTTTTTGATTCCACACCAAGTGGAAGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAGTAGATATGAGCATTTCAACTCTAGCATGGGCATTTACCTTCCGTGTAGTTCAGCTCTTTGGAAATGTTGCTGTGATGTCTCAAGCTGCATGGCAAGTGATTATAGTATTGATTCCTGTCTTGGCAGCTAGCATATGGTACCAGCGATACTACTCTGCATCAGCACGTGAATTGGCGCGATTAACTGGTATATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCGCAACCTAAATTATACAGTGGTAGTGCAAAGGAATGGTTGAGTTTCAGATTGGATCTTTTATCGATTACAGTATTTGCGTCCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATAACTAATGCTAGTATTGCGGGATTGGCTGTGACATACGGGATTAACCTAAGTGATATACAATCTGATTTAATTCGTTTTTTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACTTCCATCCCAAGTGAAGCACCACTTGTAATAAAAGACAACCGACCAGATCATTCTTGGCCGTCATTCGGAGAGGTTCATATTCAGGATTTACTGGTTCAATATGCTCCTCACTTGCCTCTTGTTTTACGCGGACTAACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTGGTGCAAACACTTTTCAGGCTTATTGAACCAGTTGCAGGAAAAATATTGATAGATAATATCAACATTTCATTGATTGGAATCCATGATTTAAGGTCAAGATTAAGCATAATACCTCAGGATCCAACAATGTTTCAAGGGACAGTAAGAAGCAACCTGGATCCGCTCGAAGAATACACAGATGAACAGATTTGGGAGACTCTAGATATGTGCCAACTTGGAGATGAAGTGAGGAAGAAAGAAGGAAAGCTTGACTCCACAGTTACTGAGAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTATGCCTCGGCCGTGTTCTACTTAAGAAAAGTAAGATCTTGGTGCTCGATGAAGCGACTGCATCAGTTGATACAGCTACAGATACTATAATTCAGCAGACAGTTAATCAACATTTCACTGATTGCACAGTTATTACCATTGCTCATAGAATAACTTCAATCCTCGATAGTGACATGGTTCTGTTTCTCAGCGCAGGGCTTATTGAAGAATATGATTCACCAAAGAAGCTACTTAAGGATAAATCATCGTCTCTTGCTCAACTAGTTGCAGAATACACTAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3906 0.3879 MTKLGHLEESLLNGEPSVNKDSDAKNILKTCYSNAGFFSLLTFSWMSPLITLGSKRTLDHEDLPLLSNNDSANGSFSTFKKKLELECGNVRNLTTINLTKVLFFSTWHGILLSGVFAFLFTCASYVGPYLIDNFVQYLNDENKAKREGYILAMTFVAANLVDALFQKHFIFKIQQVGVRMQSMLVSMIYAKGLTLSCQSKAEHSSGEIINLLTVDAERIGEFCWYMHDIWMAVLQVSLALFILHRTVGVASVATFAATVVVMLLNLPVASLQERFQGKLMEFKDKRMKATSEILMNMRILKLQTWEMKFLSKIIQIRKLEEIWLKKFLVGTALAKFIFFNAPTFVAVVTFGTCVLLGIPLESGKILSALATFRILQMPIFCLPDTISVIAETKVSVDRIAAFLRLDDLQADVVEKLPRNSSDIAIEIEDGNFSWDLSSVDTTLKNINIKVFHGMRVAVCGTVGSGKSSLLTCIIGEMPKLSGTLKVCGTKAYVAQLPWIQSGKIEENILFGREMDREKYERVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLDLLKTKTVIYITHQVEFLPDADLILVMKDGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRNTFKESSISREDTGLLSDFELEQEVENIDDRNGKLDDTVDPKGQLVQDEEREKGTIGLKVFWTYITIAYGGALVPFIFLSQILTVVLQIASNYWMALATPVSATAEPDIGSLTLMVVYVSLSIGSSFATLARTVLAVISGYKTATLLFNQMHFSFIRAPMSFFDSTPSGRILNRASTDQSAVDMSISTLAWAFTFRVVQLFGNVAVMSQAAWQVIIVLIPVLAASIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSGSAKEWLSFRLDLLSITVFASCLVFLVSFPSSITNASIAGLAVTYGINLSDIQSDLIRFFCNLENKIISVERILQYTSIPSEAPLVIKDNRPDHSWPSFGEVHIQDLLVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLIEPVAGKILIDNINISLIGIHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWETLDMCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDTIIQQTVNQHFTDCTVITIAHRITSILDSDMVLFLSAGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01149 1301 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524|GO:0016887
Trre6g01149 1301 CDD ABC_6TM_ABCC_D2 736 1030 IPR044726 GO:0140359
Trre6g01149 1301 FunFam ABC transporter C family member 3 1038 1290 - -
Trre6g01149 1301 SMART AAA_5 452 625 IPR003593 GO:0016887
Trre6g01149 1301 SMART AAA_5 1081 1273 IPR003593 GO:0016887
Trre6g01149 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 647 IPR027417 -
Trre6g01149 1301 SUPERFAMILY ABC transporter transmembrane region 106 404 IPR036640 GO:0005524|GO:0016020
Trre6g01149 1301 Gene3D - 1038 1291 IPR027417 -
Trre6g01149 1301 Pfam ABC transporter 1073 1220 IPR003439 GO:0005524
Trre6g01149 1301 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 33 1289 - -
Trre6g01149 1301 FunFam ABC transporter C family member 5 700 1036 - -
Trre6g01149 1301 Gene3D ABC transporter type 1, transmembrane domain 102 401 IPR036640 GO:0005524|GO:0016020
Trre6g01149 1301 CDD ABCC_MRP_domain1 425 625 - -
Trre6g01149 1301 CDD ABC_6TM_ABCC_D1 112 399 IPR044746 GO:0140359
Trre6g01149 1301 Gene3D - 402 671 IPR027417 -
Trre6g01149 1301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1047 1280 IPR027417 -
Trre6g01149 1301 FunFam ABC transporter C family member 10 94 407 - -
Trre6g01149 1301 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1055 1289 IPR003439 GO:0005524
Trre6g01149 1301 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 425 648 IPR003439 GO:0005524
Trre6g01149 1301 Gene3D ABC transporter type 1, transmembrane domain 700 1036 IPR036640 GO:0005524|GO:0016020
Trre6g01149 1301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 738 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01149 1301 Pfam ABC transporter transmembrane region 111 378 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01149 1301 Pfam ABC transporter transmembrane region 738 981 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01149 1301 FunFam ABC transporter C family member 5 410 657 - -
Trre6g01149 1301 SUPERFAMILY ABC transporter transmembrane region 736 1037 IPR036640 GO:0005524|GO:0016020
Trre6g01149 1301 CDD ABCC_MRP_domain2 1053 1273 - -
Trre6g01149 1301 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 391 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01149 1301 Pfam ABC transporter 443 577 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01149 Trre-Chr6 8869694 8876427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01149 425 669 Calmodulin-binding Proteins AT2G36910 28.736 1.96e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01149 - K05666 gmx:106794105 1996.86