Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01148 ATGATCTATACTAAAGGTTTGACTCTTTCGTGTCAATCGAAAGCAGAACACAGCAGCGGGAAAATCATCAATTTATTGACGGTTGATGCTGAAAGGATAGGTGAATGTTGGTCGTACATACATTGTATATGGATGACCGTTCTTCAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTAGGGGTTGCATCAGTTGCTGCTTTTGTCACCACCGTAGCTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAGAGGTTCCAAGGTAAGTTAATGGAATTCAAAGATAAAAGAATGAAGGCGACATCTGAGATTCTAATGAACATGAGGATTCTTAAACTTCAAACATGGGAGATGAAATTCTTATCAAAGATTCTTCAGATTAGGAAGTTAGAGGAGATTTGGCTAAAGAAATTTCTTGTTGTTACAGCAATTGCTAAATTTATCTTCTTTAATGCCCCAACATTTATTGCTGTGGTTACTTTTGGTACTTGTGCTCTTATAGGCATTCCACTTGAATCAGGAAAGATCTTATCTGCACTTGCAACATTCAGAATTCTTCAAATGCCTATTTTTATACTTCCAGAAACAATTTCAGTTATTGCAGAAACCAAGGTTTCACTAGATAGGATTGCAGCATTTCTTCGTCTAGATGATTTGCAGGCTGATGTAGTGGAGAAACTTCCACGCAGTAGTTCTGATATAGCAATTGAAATAGAAGACGGAAATTTCACTTGGGATTTATTGTCGGTCAATACAACGTTGAAAAACATAAATCTTAGAGTTTTTCATGGAATGAGGGTTGCTGTTTGTGGTACCGTTGGATCAGGAAAGTCTAGTTTACTTACTTGTATAATTGGGGAAATGCCAAAGCTATCTGGAACCTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCGCCGTGGATACAGAGTGGGAAGATAGAAGAAAATATACTCTTTGGTAGAGATATGGATAGGGACAAGTATGAGAGGGTGCTAGAAGCATGTTCATTGAAGAAAGACTTAGAGGTTTTACCATTTGGTGATCAGACAATTATTGGAGAGAAGGGGATAAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTGTACCAAGATGCTGATATATATCTGCTTGATGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAAGAGTGTTTGCTTGACCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTGATACTGGTCATGAAAGACGGAAGGATAACTCAATCAGGAAAATACAGTGACATTCTTACGTCGGGAACGGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCATTGTCTTCAGTGAAGTCCTTAGAGAGAAGGAATACATTTAAAGAATCAAGTATTACCGGGGAAGACACAGGTTTATTAAGTGATTTTGAACTTGAGCAAGTGGAAAACATAGACAAACAAAACGGGAAGTTAGATGACACAGTTGAGCCGAAAGGCCAACTTGTACAAGATGAAGAACGGGAAAAGGGTATAATTGGACTTAAAGTGTTCTGGACATACATCATAATAGCTTATGGAGGAGCTCTTGTACCTTTTATATTTCTTTCGCAGATACTCACTGTGGTTTTACAGATCGCAAGCAATTATTGGATGGCATTGGCAACTCCTGTTTCAGAAACTGCAGAACCTGATATTGGAAGCCTTACTCTTATGGTTGTCTATGTTTCTTTAGCATTTGGAAGTTCCTTTGCCACCCTTGCCAGAACAGTTCTTGCAGTGATATCTGGATACAAGACTGCCACCTTGCTCTTCAATCAAATGCATTTCAGCTTTATTCGAGCGCCCATGTCTTTTTTTGATTCAACACCAAGTGGAAGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATAAGAGCATTTCAAGTCTAGCATGGGCATTTACCTACCGTGTGGTTCAGCTCGTTGGAAATGTTGCCGTGATGTCTCAAGCTGCATGGCAGGTGATTATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTACTCTGCATCAGCACGTGAATTGGCGCGATTAACTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCCGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCGCAACCTAATTTATACAGTGGTAGTGCAAAGGAATGGCTGAGTTTAAGATTGGATCTTTTATCCATTACAGTATTTGCATCCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATAACTAATGCTAGTATTGCGGGATTGGCTGTGACATACGGTATTAACCTAAGTGATATACAATCTGGGTTAATTGAATGTTTTAGCCAATTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACGTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAACCGACCAGATCGTTCTTGGCCGTCATTCGGAGAGGTTCATATTCAGGATTTACAGGTTCAATATGCTCCACACTTGCCTCTTGTTTTACGCGGACTAACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTAGTGCAAACACTTTTCAGACTTATTGAACCAGTTGCAGGAAAAATATTGATAGATAATATCAACATTTCATTGATTGGAATCCATGATTTAAGGTCAAGATTAAGCATAATACCTCAGGATCCAACAATGTTTCAAGGGACAGTAAGGAGCAACCTCGCCCCGCTCGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAAAGGAAGTGAGGAAGAAAGAAGGAAAGCTCGACTCCACAGTTACTGAGAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTATGCCTCGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTCGATGAAGCGACTGCATCAGTTGATACAGCTACAGATACTATAATTCAGCAGACAGTTAATCAACATTTCACTGATTGCACAGTTATTACCATTGCTCATAGAATAACTTCAATCCTAGATAGTGATATGGTTCTGTTTCTCAGTGAAGGGCTTATTGAAGAATATGATTCACCAAAGAAGCTGCTTAAGGACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3345 0.391 MIYTKGLTLSCQSKAEHSSGKIINLLTVDAERIGECWSYIHCIWMTVLQVSLALFILHRSVGVASVAAFVTTVAVMLLNLPVASLQERFQGKLMEFKDKRMKATSEILMNMRILKLQTWEMKFLSKILQIRKLEEIWLKKFLVVTAIAKFIFFNAPTFIAVVTFGTCALIGIPLESGKILSALATFRILQMPIFILPETISVIAETKVSLDRIAAFLRLDDLQADVVEKLPRSSSDIAIEIEDGNFTWDLLSVNTTLKNINLRVFHGMRVAVCGTVGSGKSSLLTCIIGEMPKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGRDMDRDKYERVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLDLLKTKTVIYITHQVEFLPDADLILVMKDGRITQSGKYSDILTSGTDFMELVGAHRAALSSVKSLERRNTFKESSITGEDTGLLSDFELEQVENIDKQNGKLDDTVEPKGQLVQDEEREKGIIGLKVFWTYIIIAYGGALVPFIFLSQILTVVLQIASNYWMALATPVSETAEPDIGSLTLMVVYVSLAFGSSFATLARTVLAVISGYKTATLLFNQMHFSFIRAPMSFFDSTPSGRILNRASTDQSAIDKSISSLAWAFTYRVVQLVGNVAVMSQAAWQVIIVLIPVMAASIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPNLYSGSAKEWLSLRLDLLSITVFASCLVFLVSFPSSITNASIAGLAVTYGINLSDIQSGLIECFSQLENKIISVERILQYTSIPSEAPLVIKDNRPDRSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLIEPVAGKILIDNINISLIGIHDLRSRLSIIPQDPTMFQGTVRSNLAPLEEYTDEQIWEALDMCQLGKEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDTIIQQTVNQHFTDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01148 1114 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1102 - -
Trre6g01148 1114 SMART AAA_5 894 1086 IPR003593 GO:0016887
Trre6g01148 1114 SMART AAA_5 266 439 IPR003593 GO:0016887
Trre6g01148 1114 FunFam ABC transporter C family member 10 1 221 - -
Trre6g01148 1114 Gene3D - 218 484 IPR027417 -
Trre6g01148 1114 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 205 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01148 1114 Gene3D - 851 1104 IPR027417 -
Trre6g01148 1114 CDD ABC_6TM_ABCC_D2 549 843 IPR044726 GO:0140359
Trre6g01148 1114 SUPERFAMILY ABC transporter transmembrane region 2 218 IPR036640 GO:0005524|GO:0016020
Trre6g01148 1114 SUPERFAMILY ABC transporter transmembrane region 549 850 IPR036640 GO:0005524|GO:0016020
Trre6g01148 1114 Pfam ABC transporter 886 1033 IPR003439 GO:0005524
Trre6g01148 1114 Pfam ABC transporter 257 391 IPR003439 GO:0005524
Trre6g01148 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 461 IPR027417 -
Trre6g01148 1114 CDD ABCC_MRP_domain1 239 439 - -
Trre6g01148 1114 FunFam ABC transporter C family member 5 512 849 - -
Trre6g01148 1114 CDD ABC_6TM_ABCC_D1 1 213 IPR044746 GO:0140359
Trre6g01148 1114 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 239 462 IPR003439 GO:0005524
Trre6g01148 1114 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 551 831 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01148 1114 Pfam ABC transporter transmembrane region 551 794 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01148 1114 Pfam ABC transporter transmembrane region 14 192 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01148 1114 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 868 1102 IPR003439 GO:0005524
Trre6g01148 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 860 1093 IPR027417 -
Trre6g01148 1114 FunFam ABC transporter C family member 5 224 471 - -
Trre6g01148 1114 FunFam ABC transporter C family member 3 851 1103 - -
Trre6g01148 1114 ProSitePatterns ABC transporters family signature. 364 378 IPR017871 GO:0005524|GO:0016887
Trre6g01148 1114 Gene3D ABC transporter type 1, transmembrane domain 1 217 IPR036640 GO:0005524|GO:0016020
Trre6g01148 1114 Gene3D ABC transporter type 1, transmembrane domain 513 849 IPR036640 GO:0005524|GO:0016020
Trre6g01148 1114 CDD ABCC_MRP_domain2 866 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01148 Trre-Chr6 8857402 8863724 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01148 239 483 Calmodulin-binding Proteins AT2G36910 29.502 1.10e-25 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01148 - K05666 gmx:106794105 1718.36