Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01146 ATGTTTAAGTTCCAACAGGTTGGTGTTAGGATGCAATCAATGTTGGTGTCAATGATCTATGCTAAAGGTTTGACCCTTTCAAGTCAATCAAAAGAGCAACATAGCAGTGGCAAAATTATCAACTTATTGACTGTTGATGCTGCAAGAATAGGCGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTTTACAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTAGGGGTTGCTTCAGTAGCTGCTTTTGCCGCTACCGTAGTTGTGATGTTGCTAAACCATCCTATCGCATCAATGCAAGAGAAATTCCAAGGTAAGTTAATGGAGTTCAAAGATAAAAGAATGAAGGCGACGACTGAGATTCTAATGAACATGAGGATTCTTAAATTGCAAGCGTGGGAGATGAAGTTCTTATCAAAGATCATTCAGGTTAGGAAGTTAGAGGAGTTATGGCTAAAGAAATTTCTTGTTGGTTCTGCAATTGTTAGATTTCTGTTTTTTAATGCGCCAACGTTTGTTGCTGTCGTCACTTTTGGTTCTTGTGTTCTTCTAGGCATCCCACTTGAATCAGGAAAGATCTTAACTGCTCTTGCAACATTCCGAATTCTTCAAATGCCTATATATAATCTTCCTGACACAATTTCAATGATTGCACAAACTAAAGTTTCTCTAGATAGGATTGTCGCGTTTCTTCGTCTAGATGATTTGCAAACTGATGTAGTGGAGAAGCTTCCGCGAGGTAGTTCTGATATAGCAATTGAAATAGAAAATGGAAATTTCACTTGGGATTTATCCTCTGTGAATACAACATTGAAAAACATAAATCTTAGAGTTTTTCATGGCATGAGAGTTGCTGTATGTGGTACTGTCGGATCAGGAAAATCTAGTTTACTTTCTTGTATAATAGGGGAAATACCAAAGCTATCTGGAACTTTGAAGGTGTGTGGAACAAAGGCTTATGTTCCTCAATCGCCATGGATACAGAGTGGGAAGATAGAAGAGAATATATTATTTGGTAGCGAAATGGATAGTGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCATTGAAGAAAGACTTGGAGGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTTTATCAAGATGCTGATATATATCTGCTAGACGATCCGTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTTATGCTGATCTGATACTTGTCATGAAAGAAGGAAGGATAACACAATCAGGAAAATACAATGACATTCTTACATCGGGAACCGATTTTATGGAACTTGTGGGAGCACATAGAGCAGCGTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGAATACATTTAAAGAATCTAGTATTACCGGGGAAGACAAAGGTTTATTATGTGATTTTGAACTTGAGCAAGAAGTGGAAAACATAGATGATCAAAAAGGAAAGTTAGACGACACAGTTGAGCTGAAAGGACAACTTGTTGAAGACGAAGAACGAGAAAAGGGTAGAATTGGGTTTAAAGTGTTCTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTACCTTTAATATTTCTTTCACAGATACTCACTGTGGTTTTACAGATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACTGCACAACCTGATATTGGAAGCCTCACTCTTATGGTTGTATATGTTTCTTTGGCAATTGGAAGTTCCTTTGGCACCCTTGCCAGAGCAATTCTTGCTGTAATAGCTGGATACAAGACTGCCATAATGCTCTTCAATCAAATGCATTTGAGCTTTATTCGAGCACCAATGTCGTTTTTTGATGCCACTCCAAGTGGAAGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATATGACCATTCCAAATCTAGCATGGGGATTTACCTACAATCTCGTTCAGGTCTTAGGAAATGTTGCTGTTATGTCCCAAGCTGCATGGCAGGTGTTTATAGTATTGATTCCTGTAATGGCAACCTGCATATGGTACCAGCGATACTACTCTGCATCAGCACGTGAATTGGCACGTTTAACTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACGATTTCTGGATCAACAACGATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGAAATTGATAGACAAATATTCTCAACCTAAACTATACAGTGCTAGTGCAATGGAATGGCTGAGTTTCAGATTGGATCTTTTATCCACTACAGTATTTGCCTTCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATATCTGATCCAAGCATTGCGGGATTGGCAGTGACATATGGGATTAGTCTAAATTCTGCACAATTTAGTTTAATTTCGATTCTTTGCAATTTGGAAAACAAAATTATATCTGTCGAAAGAATACTTCAGTACACCTCCATCCCAAGTGAAGCACCTCTTGTTATCAAAGACAATCAGCCAGATCATTCTTGGCCATCATTTGGAGAGGTTCTTATCCAAGATTTACAGGTTCAGTATGCTCCTCACTTGCCTCTTGTTTTACGCGGACTTACTTGCACTTTTACTGCTGGAGCAAAGACTGGCATTATTGGAAGAACTGGAAGTGGAAAAACTACACTAGTACAAGCACTTTTCAGACTTGTTGAACCTGTAGCTGGACAAATATTGATAGATAACATCAACATCTCATTGATTGGTATTCATGATTTAAGGTCCAGACTAAGCATAATTCCTCAGGATCCAACAATGTTTGAAGGGACCGTAAGAAGCAACCTGGACCCGCTCGAAGAGTTCACAGATGAACAGATTTGGGAGGCTCTAGATATGTGTCAACTTGGAGATGAAGTTAGAAGGAAAGAAGGAAAGCTTGATTCCACAGTTACTGAGAATGGAGAAAACTGGAGCATGGGTCAAAGGCAATTGGTATGCCTCGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCTACAGATAATATTATTCAGCAGACAGTTAAGCAACATTTCTCTGATTGCACAGTCATTACCATTGCTCATAGAATAACTTCGATCCTCGATAGTGACATGGTTCTGTTTCTCAGTGAAGGTCTTATTGAAGAATATGATTCACCAAAAAAGCTGCTTAAGGACAAATCTTCATCCCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3399 0.3872 MFKFQQVGVRMQSMLVSMIYAKGLTLSSQSKEQHSSGKIINLLTVDAARIGEFCWYMHDPWMAVLQVSLALFILHRSVGVASVAAFAATVVVMLLNHPIASMQEKFQGKLMEFKDKRMKATTEILMNMRILKLQAWEMKFLSKIIQVRKLEELWLKKFLVGSAIVRFLFFNAPTFVAVVTFGSCVLLGIPLESGKILTALATFRILQMPIYNLPDTISMIAQTKVSLDRIVAFLRLDDLQTDVVEKLPRGSSDIAIEIENGNFTWDLSSVNTTLKNINLRVFHGMRVAVCGTVGSGKSSLLSCIIGEIPKLSGTLKVCGTKAYVPQSPWIQSGKIEENILFGSEMDSEKYERVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPYADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRNTFKESSITGEDKGLLCDFELEQEVENIDDQKGKLDDTVELKGQLVEDEEREKGRIGFKVFWKYITTAYGGALVPLIFLSQILTVVLQIASNYWMALATPVSATAQPDIGSLTLMVVYVSLAIGSSFGTLARAILAVIAGYKTAIMLFNQMHLSFIRAPMSFFDATPSGRILNRASTDQSAIDMTIPNLAWGFTYNLVQVLGNVAVMSQAAWQVFIVLIPVMATCIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMKLIDKYSQPKLYSASAMEWLSFRLDLLSTTVFAFCLVFLVSFPSSISDPSIAGLAVTYGISLNSAQFSLISILCNLENKIISVERILQYTSIPSEAPLVIKDNQPDHSWPSFGEVLIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIIGRTGSGKTTLVQALFRLVEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEFTDEQIWEALDMCQLGDEVRRKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01146 1132 CDD ABC_6TM_ABCC_D1 1 230 IPR044746 GO:0140359
Trre6g01146 1132 Gene3D - 237 501 IPR027417 -
Trre6g01146 1132 CDD ABCC_MRP_domain1 256 456 - -
Trre6g01146 1132 ProSitePatterns ABC transporters family signature. 381 395 IPR017871 GO:0005524|GO:0016887
Trre6g01146 1132 CDD ABCC_MRP_domain2 884 1104 - -
Trre6g01146 1132 Pfam ABC transporter 274 408 IPR003439 GO:0005524
Trre6g01146 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 478 IPR027417 -
Trre6g01146 1132 Pfam ABC transporter 904 1051 IPR003439 GO:0005524
Trre6g01146 1132 SUPERFAMILY ABC transporter transmembrane region 4 234 IPR036640 GO:0005524|GO:0016020
Trre6g01146 1132 FunFam ABC transporter C family member 10 1 238 - -
Trre6g01146 1132 FunFam ABC transporter C family member 5 531 867 - -
Trre6g01146 1132 Gene3D - 869 1122 IPR027417 -
Trre6g01146 1132 Pfam ABC transporter transmembrane region 569 822 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01146 1132 Pfam ABC transporter transmembrane region 4 209 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01146 1132 SMART AAA_5 283 456 IPR003593 GO:0016887
Trre6g01146 1132 SMART AAA_5 912 1104 IPR003593 GO:0016887
Trre6g01146 1132 CDD ABC_6TM_ABCC_D2 567 861 IPR044726 GO:0140359
Trre6g01146 1132 Gene3D ABC transporter type 1, transmembrane domain 1 236 IPR036640 GO:0005524|GO:0016020
Trre6g01146 1132 Gene3D ABC transporter type 1, transmembrane domain 531 867 IPR036640 GO:0005524|GO:0016020
Trre6g01146 1132 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 4 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01146 1132 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1120 - -
Trre6g01146 1132 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 569 849 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01146 1132 FunFam ABC transporter C family member 3 869 1121 - -
Trre6g01146 1132 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 256 479 IPR003439 GO:0005524
Trre6g01146 1132 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 888 1120 IPR003439 GO:0005524
Trre6g01146 1132 FunFam ABC transporter C family member 5 241 488 - -
Trre6g01146 1132 SUPERFAMILY ABC transporter transmembrane region 565 868 IPR036640 GO:0005524|GO:0016020
Trre6g01146 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 1111 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01146 Trre-Chr6 8849045 8855421 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01146 256 500 Calmodulin-binding Proteins AT2G36910 30.303 1.87e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01146 - K05666 gmx:106794105 1832.38