Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01145 ATGAAGTCGGATATTGTTGAGAAGCTTCCAAAAGGTAGTACTAGTAATAGTTCTGATATAGCAATTGAAGTAATTGATGGAAATTTCTTTTGGGATTTACCATCAAATTTAGTATTGAAAAACATAAACTTTAAGGTTTTTCGCGGAACGAAAGTTGTTATTTGTGGTACTGTTGGATCAGGAAAATCTACTTTACTTTCATGTATATTAGGAGAAGTACCAAAAATATCAGGGGTCATAAAGGTTTGTGGAACAAAGGCCTATGTAGCTCAGTCACCATGGATACAAAGTAGCAAGATAGAGGATAATATATTGTTTGGGAAGGACATGGAAAGGGAAAGATATGAGAAGGTTCTTGAAGCATGCTCACTAAAGAAGGATCTTGAGATTTTGTCATTTGGAGATCAAACAATTATAGGGGAGAGGGGAATAAATTTGAGTGGTGGACAAAAACAACGGATACAGATTGCCCGTGCTTTGTATCAAGATGCTGATATATATCTATTCGATGATCCGTTTAGTGCTTTAGATGCTCATACAGGAACTCACCTGTTTAAGGAATGCTTGTTGGGATTTTTAAGTACAAAGACCGTGATTTATGTCACGCATCAAGTAGAGTCCTTACCTGCTGCTGACCTTATCTTGGTTATGAAAGATGGGGAAATAACTCAATGTGGAAAGTATAACGATCTACTCAACTCAGGCACCGATTTTATGGAATTAGTTAGTGCTCATAGAGAAGCATTGTCTGCACTTGATTCATCAAATGAAGATACAACAATATCTGATAAAATAAGTACATCACAAGAGTGTCTAGGTATCTCTCTTTCTCATGAAGTTGACAAAATAGTACAAAATGATGAAATAGACGACAAGTTTGAGGCAAAAGGCCAGCTTATTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTGTATTGGAAATATATCACCATAGCATATGGAGGAGCTCTTATACCACTCATTTTGATAGCTGAAATCATGTTTCAACTTCTTCAAATTGGAAGCAACTATTGGATGGCTTCATCAACACCTATTTCAAAAGATGTAGAGCCAACTGTTGGAGGAAGTAAACTCCTAGTTGTATATGCAGCTTTGGCCTTAGGAAGTTCTTTATGTGTCCTAGCTAGAGCAACACTTGTTGTCACAGCTGGTTATAAGACTGCTACTCTACTCTTCAATAAAATGCATCTTTGCATTTTCCATGCTCCGATGTCATTTTTTGATGCCACTCCAAGTGGAAGAATCCTTAATAGGGCTTCTACTGACCAAAGTGCAGTGGATATAAACATTCCTTTTCAAACTGCATTAGTTGCTTGTTCTGTGATCCATCTTCTCGGAATTATAGCGGTGATGTGTCAAGTTGCATGGCAAGTTTTCATTGTCTTTGTTCCTATGATAGCAATCTGCATATGGTATCAGAAATATTATATACCATCAGGCCGCGAACTATCTCGTTTAGTCGGAGTATGCAAAGTTCCTGTCATTCAACACTTTGCTGAAACAATTTCAGGTACATCAACTATCAGGAGCTTTGATCAGGTGTCAAGATTTGAAGAAACAAATATGAAACTAATGGATGGATATTCACGCCCCAAATTCAATATTGCTGGTGCTATGGAATGGTTGTGTTTTCGATTAGATATGGTGTCTTCTTTCACATTTGCCTTTTGCTTGGTAGTCTTGATAGTGGTTCCACAAGGAGTGATAAATTCTGATGTTGCTGGTTTAGCTGTGACATACGGCCTTAATCTGAACATTATACAAGCATGGATGATATGGGAACTTAGCAACTTAGAGACCAAAATTATATCAGTAGAAAGAATACTTCAATATACTTCTATTCCTAGTGAGCCTCTTCTTGTTGTAGACGAAAACCGGCCACACGCTTCTTGGCCATTATATGGCACAATTGATATTCACAACTTGCAGGTACGTTATGCTCCTCACATGCCGTTTGTTTTACGTGGCCTTACATGCACATTTGTTGGAGGACTGAAAACTGGAATTGTTGGGAGAACTGGAAGTGGTAAATCAACTCTCATACAAGCACTTTTTCGAATCGTTGAGCCTTCTTTTGGGAGAATTATGATTGATGGTATCAATATATCTTCCATCGGACTTCACGATTTGAGGTCAAGATTGAGCATTATTCCTCAGGATCCAACCATGTTTGAAGGCACTGTGAGGAGTAATTTGGATCCATTGGAAGAATATACAGATGAACAAATTTGGGAGGCACTAGATAAGTGTCAACTTGGAGACGAAGTTAGAAGAAAAGACGGACGGTTAGACTCAGCAGTGAGTGAGAATGGTGAGAATTGGAGTATTGTAATTACAATTGCACATAGAATAACTTCTGTTATTGACAGCGATATGGTTCTTCTACTTAATCAAGGACTAATTGAAGAGTATGATTCTCCAACAAGATTGCTAGAGGACAAGTTTTCATCTTTTGCTCAACTTGTTGCTGAGTATACCACAAGGTCCAACTTCAGACTATGA 2532 0.3784 MKSDIVEKLPKGSTSNSSDIAIEVIDGNFFWDLPSNLVLKNINFKVFRGTKVVICGTVGSGKSTLLSCILGEVPKISGVIKVCGTKAYVAQSPWIQSSKIEDNILFGKDMERERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSALDAHTGTHLFKECLLGFLSTKTVIYVTHQVESLPAADLILVMKDGEITQCGKYNDLLNSGTDFMELVSAHREALSALDSSNEDTTISDKISTSQECLGISLSHEVDKIVQNDEIDDKFEAKGQLIQEEEREKGKVGFSVYWKYITIAYGGALIPLILIAEIMFQLLQIGSNYWMASSTPISKDVEPTVGGSKLLVVYAALALGSSLCVLARATLVVTAGYKTATLLFNKMHLCIFHAPMSFFDATPSGRILNRASTDQSAVDINIPFQTALVACSVIHLLGIIAVMCQVAWQVFIVFVPMIAICIWYQKYYIPSGRELSRLVGVCKVPVIQHFAETISGTSTIRSFDQVSRFEETNMKLMDGYSRPKFNIAGAMEWLCFRLDMVSSFTFAFCLVVLIVVPQGVINSDVAGLAVTYGLNLNIIQAWMIWELSNLETKIISVERILQYTSIPSEPLLVVDENRPHASWPLYGTIDIHNLQVRYAPHMPFVLRGLTCTFVGGLKTGIVGRTGSGKSTLIQALFRIVEPSFGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKDGRLDSAVSENGENWSIVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLEDKFSSFAQLVAEYTTRSNFRL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01145 843 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 244 IPR003439 GO:0005524
Trre6g01145 843 Gene3D - 630 786 IPR027417 -
Trre6g01145 843 FunFam ABC transporter C family member 5 3 253 - -
Trre6g01145 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 824 IPR027417 -
Trre6g01145 843 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01145 843 ProSitePatterns ABC transporters family signature. 146 160 IPR017871 GO:0005524|GO:0016887
Trre6g01145 843 Pfam ABC transporter 665 769 IPR003439 GO:0005524
Trre6g01145 843 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 23 786 - -
Trre6g01145 843 FunFam ABC transporter C family member 9 631 780 - -
Trre6g01145 843 CDD ABC_6TM_ABCC_D2 328 622 IPR044726 GO:0140359
Trre6g01145 843 FunFam ABC transporter C family member 5 291 628 - -
Trre6g01145 843 Pfam ABC transporter 39 173 IPR003439 GO:0005524
Trre6g01145 843 Gene3D - 4 270 IPR027417 -
Trre6g01145 843 SMART AAA_5 673 810 IPR003593 GO:0016887
Trre6g01145 843 SMART AAA_5 48 221 IPR003593 GO:0016887
Trre6g01145 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 243 IPR027417 -
Trre6g01145 843 Pfam ABC transporter transmembrane region 331 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g01145 843 CDD ABCC_MRP_domain1 22 221 - -
Trre6g01145 843 SUPERFAMILY ABC transporter transmembrane region 315 628 IPR036640 GO:0005524|GO:0016020
Trre6g01145 843 Gene3D ABC transporter type 1, transmembrane domain 290 628 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01145 Trre-Chr6 8840565 8845014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01145 645 842 Calmodulin-binding Proteins AT2G36910 23.529 3.30e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01145 - K05666 gmx:100775358 1356.27