Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01109 ATGGCAGTTTCTTCTCTATCAGCAACATTTGTTCCTTCTCTTTCTCAAACCAATTCTTCACCATTATTATCTTCTAAACCTAAGTTCCAATCTTTAACCTTTCTCAATGGTAACCCAAAATCTCTTCGATTATCAACCGTTGTTCATGCTGCTCCAGAAGTGTTGAATTCTGAGGTTGATGAGTTGGAGACTCCAAGCACTTCATCAATTACCATTGGGGATGATGCAGACATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTGCCCTTGATAGAGGATTCTTGCAAGCAGATATTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAGTTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGATTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTCTATCCTACAGCTCAAACAATAGATTCTCTTATGCAGCTCGATCTTCCTGCTGGTGTTGATGTCGAGGTCAAGCTCTGA 546 0.4139 MAVSSLSATFVPSLSQTNSSPLLSSKPKFQSLTFLNGNPKSLRLSTVVHAAPEVLNSEVDELETPSTSSITIGDDADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRVHCVLKSPHVHKDARFHFEIRTHQRVIDILYPTAQTIDSLMQLDLPAGVDVEVKL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01109 181 Hamap 30S ribosomal protein S10 [rpsJ]. 82 181 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 FunFam 30S ribosomal protein S10 82 181 - -
Trre6g01109 181 NCBIfam 30S ribosomal protein S10 83 180 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 PRINTS Ribosomal protein S10 family signature 140 154 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 PRINTS Ribosomal protein S10 family signature 119 134 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 PRINTS Ribosomal protein S10 family signature 84 97 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 Pfam Ribosomal protein S10p/S20e 86 180 IPR027486 -
Trre6g01109 181 Gene3D Ribosomal protein S10 domain 73 181 IPR036838 -
Trre6g01109 181 SMART Ribosomal_S10_2 86 180 IPR027486 -
Trre6g01109 181 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 40 181 IPR001848 GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 ProSitePatterns Ribosomal protein S10 signature. 108 123 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre6g01109 181 SUPERFAMILY Ribosomal protein S10 84 181 IPR036838 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01109 83 181 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 32.000 1.31e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01109 K02946 - gmx:100306286 272.322