Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01107 ATGACTGTAGACGATCGGTGTTTTGTTGAATGGAAAGAACAATTTGTTTCACAAGAGCGTGGACATCGTATAGTTCACTATTACTTTAAGGATTCTGCTGGAGAATCATTCCTTGCGGTTATTGGCACTGAGAGGAGTGTTAGACATATGTGCTATGTTATTGCTGAGGAGTTTCTGGAAATTTGTGGATTGGAAATTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTCGATTGGCTAACGTCAATGCTTTCAAAGCAGCATCTGCAGGAAGATAGAAATGTATGGCCTGCTCATAATTTGGCACTAGCTCATGGGATCAGAAATGGTGTCAAAAAAGTTAGTGCACAAATGGTGGATGATAAGGACATTCCAATGAGTAACTCCAAAGTATCCAATTCAGACATTGCTTGGTCAGGACTTGCATGGACATGTGGCAAACAACTCAAACATTATCCCTCTTTTTGCAGGAATGGCATCCAAATAGGAATTCAATCCTTTGTCTTCGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTAGAGGATATGTATGAAGACAAGAGGGGGCAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCCGTACGAAATCCTCACCCTCGGGAAGTTTTCATCACTTCTTATTCACAAGTCATCAGTGCAGAGTGTGTTGACGGACCTGCTACAGTCTTAACTCGTCAACATTATGAAAAATGCACGCCTTATTTTTCTCCCACTTCCAAAGACAGAATACATTTGTGCTTTCGGCAATTAAAAGGCAACAAAGTCAAGCCCTTTGACTTAAGTAAACTGCGTGGCTACTATACTCAGCCAGCTCTTTCTTCCTTGCACGTTGATACTATCAACAACACCGAGTCTCAGAGCAACAGCCTAACAGGAGAAGATGATGATTTGGATGTTGGTGATGATACAAAGAGCGGAGATAAAAGGAGTAGAAGTAATGGTCGACAAGGGGTTAGGAAGTTGATTAGAAGTAATCAAATGATGGGATACCAAACTTTTCAGGTTGTAAATTATGCTAGGCCAGATAGGAGATTGCTTTCTTTGAAACAGGTTGAATGTAAACCTTGGTATAACCTGACATGCAAAGTTGATGACAAGATAGAGGTACTCAGTCAGGATAGTGGCATCCGAGGCTGTTGGTTTAGGTGTACAGTTCTACAGGTAGCTCGGAAACAGCTGAAAGTTCAATATGATGATGTTCAGGATGAAGACGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGACAACCTGGCCGATCGACCATCAGGCCAGCTCCACCTAATGAAGAACAAGAAGTGATTGTCGAGGTTGGAACTGCCGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGCGTTGTAACTACAATTAACAACTGTGGTGATGACAGTGTTCAAGTCTACTTTCCTGGTGAAAGCTTGCAAGTGACAGTACATAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGCGGCACTTGGATTAATATAAAGGCAAAGCCTGATATAACCCCAACTATATTAACCACTAATAGCTTTAACACAAACCTCACCATGTCTCCATCTATGGTTAAAGACGCAGACTCTGTCGGTTTTGCTAATTCATGTCATGAAGTTCCTGCTGGTGAGAAGTCTAACGAACCTGATATTGTTGAAGAGAAACTTGTATGCAATGGTGTTGCTGAAGATAAGGTTTCTGTCGAAGATGATAAACCCCCTTCAGAAAAAAGTACAGATATTGAAGATAATGGTAGTAATAATGATAAGGACAACAATGAGAATGGTGATAACAAGAACGGTAATACTGAACATATCGATGTTGTGGAGGTGATAGTGACTTCGGGAGCTGACTGTAAAGCTGTAGAACTAATGGATGTGGATGTGTAA 1983 0.4145 MTVDDRCFVEWKEQFVSQERGHRIVHYYFKDSAGESFLAVIGTERSVRHMCYVIAEEFLEICGLEIPPGFKWRSRREVVDWLTSMLSKQHLQEDRNVWPAHNLALAHGIRNGVKKVSAQMVDDKDIPMSNSKVSNSDIAWSGLAWTCGKQLKHYPSFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGPATVLTRQHYEKCTPYFSPTSKDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLHVDTINNTESQSNSLTGEDDDLDVGDDTKSGDKRSRSNGRQGVRKLIRSNQMMGYQTFQVVNYARPDRRLLSLKQVECKPWYNLTCKVDDKIEVLSQDSGIRGCWFRCTVLQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLEMRQPGRSTIRPAPPNEEQEVIVEVGTAVDAWWSDGWWEGVVTTINNCGDDSVQVYFPGESLQVTVHKKDLRISRDWLGGTWINIKAKPDITPTILTTNSFNTNLTMSPSMVKDADSVGFANSCHEVPAGEKSNEPDIVEEKLVCNGVAEDKVSVEDDKPPSEKSTDIEDNGSNNDKDNNENGDNKNGNTEHIDVVEVIVTSGADCKAVELMDVDV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01107 660 SMART BAH_4 162 281 IPR001025 GO:0003682
Trre6g01107 660 Pfam BAH domain 168 266 IPR001025 GO:0003682
Trre6g01107 660 ProSiteProfiles BAH domain profile. 162 281 IPR001025 GO:0003682
Trre6g01107 660 MobiDBLite consensus disorder prediction 594 635 - -
Trre6g01107 660 MobiDBLite consensus disorder prediction 298 338 - -
Trre6g01107 660 Gene3D - 130 278 IPR043151 -
Trre6g01107 660 Pfam Agenet domain 384 459 IPR008395 -
Trre6g01107 660 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 381 623 - -
Trre6g01107 660 MobiDBLite consensus disorder prediction 298 313 - -
Trre6g01107 660 CDD Tudor_Agenet_AtDUF_rpt1_3 382 459 - -
Trre6g01107 660 CDD BAH_plant_1 157 286 - -
Trre6g01107 660 SMART agenet_At_2 465 523 IPR014002 -
Trre6g01107 660 SMART agenet_At_2 379 444 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01107 Trre-Chr6 8538582 8542285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01107 391 521 PHD Transcription Factor Family AT5G58610 30.370 4.70e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01107 - - gmx:100306240 938.332