Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01093 ATGGCGGAAATGGCGGTGTCTTTAGTTGTTGACCAACTAATTCCACTGTTAAGGGAAGAAGCCAAACTGTTTAGAGGCATCCATAAGGAGTTTAAATACATTAAAGATGAACTTGAAAGCATTCAAGCATTCCTTAAGGATGCTGATAAAAGAGCTGAAGGAGACAACACTAGTGAAGGAGTCAAAACATGGGTGAAGCAAGTTAGGGAAGTAGCTTTTCGCATTGAAGATATCATTGATGATTATTTGATCAAGGTGGTACCGCAGCCTCGTGATCATCCTCGATGTGTAGCTTTACTCCATAAGCTTAAAACTATCATCCCTCGCCATCAAATAGCATATGAGATTCAAGACATCAAGTCATCTATTATTGAGATCTCGGAAAGAAGTAAAAGATACGACTTCCAACGTTCTTTTGAACAAGGATCCAGTAATTCTAGAGGAAGCCAGAATGCCAAATGGCACGACTCTCGTTTGGCCGCTCTTTACATTGAGGAAACTGAAGTTGTGGGCTTTGAAGCTCCAAAAAAAAGATTGATTAAATGGATGGTAAAGGGAAGGAAAAAACTCACTGTGGTTTCTGTGGTAGGAATGGGAGGCCAAGGAAAAACAACTCTTGCCAAGAAAGTTTTTGACGACAAAAATATTATTGGACACTTTGAATGTCGTGTATGGATCACAGTGTCTCAATCATATAATGTTGAAGGGTTGTTGAGGGACATGCTGCTAAAGTTTTACAAACAAAAAGGAGAAGTTGCTCCTCAAAGTATTTATCAAATGGATCGAGCTTCATTGATAGATGAAGTCAGAAATTACTTGCAGCAAAAGAGGTATGTTGTTGTGTTTGATGATGTTTGGAAATTACATTTTTGGGATGATATTAAATTTGCTGCAATTGATAATAAAAATGGAAGTAAGGTATTGATCACAACAAGGAACCAAGATGTTATGGAGTCTTGTAAAAGATCTTCTTTCATTAAAGTGCTTCAGTTGGAATCTTTAACCGAAGAACAATCTTTGGAGTTGTTCAATAAGAAGGCATTTAGAGTTGACGATGGTGGATGTTGTCCAAAGGAACTCATTGACATAGCTAAAGAAATTGTTAACAAATGCAAGGGTTTACCACTAGCAATTGTTGCCATCGGTGGTCTTTTGTCTACAAGCAAGAAAAATGTGTTTGAGTGGCAGAGATTTAGAGAAAATCTAAGTTTGGGGCAAAATAAAGATACACATTTAATTGACATAAAAGACATTTTAGGGTTAAGTTATAATGATTTGCCTTACTATCTCAAGTCATGCTTGTTGTATTTCGGAATATATCCAGAAGATTATGAAGTTAAATCAAAGAGAGTGACTCGACAGTGGATAGCTGAAGGGTTTGTGAAGGAGGAAAGAGGAAAGACTTTGGAAGAAGTTGCAGAAGAATATTTAACAGAGTTGATTCATAGAAGCTTGGTGCAAGTATCTTCGCTTAGAATTGATGGTAAAGCTAAATATTGTCGTATTCATGATCTAATACGCAATATGATCTTTGAGAAAATTGAGGATTTAAATTTTTGCAAGCATATTAGTGAAGATGGACAATCATCCATAAGTGTAACAACTCGGCGCCTATCAATCATTACTAGTTCCAGTGATTTAGTGGAGTGTATTGAAAGCTCACATATTCGGTCACTATTTTTTTTTACAGAAAATGATTCACTTGTGCACGTTGACAAAAGAATCACTATAAAAAATAGGTTGCTGAAGGTTCTTGATTATGAATCTTTTCCATTGTTGAAAATTCCTAAGAAATTGGGAAATTTGAACCACTTGAAGTTTTTAAGCTTCAGGCATGCAGATGTAGGTAAACTCCCAAAGTCCATTGGCATGCTCCAGAACCTAGAGACCTTGGATGTAAGGGATACATCTATCATTGAGTTGCCCAAGGAGATAAGCAAGCTTAGAAAGCTAAGACATCTTATCGGCCATGGATTGTCTTTTGTTCAACTAAAGGATGGTATTGGAGAGATGACATCCCTGCAAACGCTACGTGAAGTTAATCTTGATTTGGGTGGAGGTTTAGAGCTAATTAAAGAGTTAAGAAAGCTGAAGCAGATAAGGGCCTTGAGATTGTATAATGTTTGTACAAAATATGGAAGCCTTCTATCTTCCTCACTCAATGAAATGCAACACCTGGAAAAATTGGTTGTTTCATCAAGTATAATTTTTACTGAAGCCTTTGATTTGAATTTGATTTCATCGCCAACTATGCTTCAAACACTTACACTATTTCTGAGGTTACAAAAGTTGCCAGTGTGGATTCCAGAGCTTCAAAATCTAGTTGTGTTGAGGTTGATGGACTCCCATTTAACCAAAGATCCAATGGAATCACTAAAATGTATGCAACACTTGTTGATCCTCGATCTAAGTTTGAAGAATATACCTACTGGCATCAAACACTTAAAGAAGCTTGAAGCTCTCCATATACTTGATATGCAAGTTGAATTTGTGGAGCACAATTCTACTGAGGATTGGATCATGGAGCATGTACCCCTTTTTGAAATTGAAACAATAGATGGGAATGTTATTCGAAACTCAAGGAGTTAA 2589 0.3673 MAEMAVSLVVDQLIPLLREEAKLFRGIHKEFKYIKDELESIQAFLKDADKRAEGDNTSEGVKTWVKQVREVAFRIEDIIDDYLIKVVPQPRDHPRCVALLHKLKTIIPRHQIAYEIQDIKSSIIEISERSKRYDFQRSFEQGSSNSRGSQNAKWHDSRLAALYIEETEVVGFEAPKKRLIKWMVKGRKKLTVVSVVGMGGQGKTTLAKKVFDDKNIIGHFECRVWITVSQSYNVEGLLRDMLLKFYKQKGEVAPQSIYQMDRASLIDEVRNYLQQKRYVVVFDDVWKLHFWDDIKFAAIDNKNGSKVLITTRNQDVMESCKRSSFIKVLQLESLTEEQSLELFNKKAFRVDDGGCCPKELIDIAKEIVNKCKGLPLAIVAIGGLLSTSKKNVFEWQRFRENLSLGQNKDTHLIDIKDILGLSYNDLPYYLKSCLLYFGIYPEDYEVKSKRVTRQWIAEGFVKEERGKTLEEVAEEYLTELIHRSLVQVSSLRIDGKAKYCRIHDLIRNMIFEKIEDLNFCKHISEDGQSSISVTTRRLSIITSSSDLVECIESSHIRSLFFFTENDSLVHVDKRITIKNRLLKVLDYESFPLLKIPKKLGNLNHLKFLSFRHADVGKLPKSIGMLQNLETLDVRDTSIIELPKEISKLRKLRHLIGHGLSFVQLKDGIGEMTSLQTLREVNLDLGGGLELIKELRKLKQIRALRLYNVCTKYGSLLSSSLNEMQHLEKLVVSSSIIFTEAFDLNLISSPTMLQTLTLFLRLQKLPVWIPELQNLVVLRLMDSHLTKDPMESLKCMQHLLILDLSLKNIPTGIKHLKKLEALHILDMQVEFVEHNSTEDWIMEHVPLFEIETIDGNVIRNSRS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01093 862 Pfam Rx N-terminal domain 5 90 IPR041118 -
Trre6g01093 862 PRINTS Disease resistance protein signature 371 385 - -
Trre6g01093 862 PRINTS Disease resistance protein signature 272 286 - -
Trre6g01093 862 PRINTS Disease resistance protein signature 623 639 - -
Trre6g01093 862 PRINTS Disease resistance protein signature 192 207 - -
Trre6g01093 862 SUPERFAMILY L domain-like 501 829 - -
Trre6g01093 862 CDD RX-CC_like 2 128 IPR038005 -
Trre6g01093 862 FunFam Probable disease resistance protein At1g63360 423 512 - -
Trre6g01093 862 FunFam Probable disease resistance protein At1g61300 154 324 - -
Trre6g01093 862 Gene3D - 429 513 IPR036388 -
Trre6g01093 862 PANTHER DISEASE RESISTANCE PROTEIN RP 33 823 IPR044974 GO:0006952
Trre6g01093 862 Gene3D - 157 328 IPR027417 -
Trre6g01093 862 Pfam NB-ARC domain 173 424 IPR002182 GO:0043531
Trre6g01093 862 Gene3D - 333 427 IPR042197 -
Trre6g01093 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 437 IPR027417 -
Trre6g01093 862 Gene3D Ribonuclease Inhibitor 549 842 IPR032675 -
Trre6g01093 862 Gene3D - 4 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01093 Trre-Chr6 8490056 8492803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01093 190 390 WRKY Transcription Factor Family AT5G45050 27.885 2.84e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01093 K13457 - mtr:25489074 879.782