Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01069 ATGGGAACCTACATAGAAAATGTTGTAGAAGAGCATGAGCACATTTTCCATAGCCAATATTCGCTGGTTCCGGTTCCTGACAACGTGACATTGCCGGAATTTGTGCTTCAAAATGTCGAATTTTACGGTGATAAGGTTGCATTTGTCGATGCGGAGAGTGGAAAAGAGATAACTTATAGCGAGGTAGCGAGGGATATACATAGATTTTCAAAGGCTTTAAGATCTCTTGGTTTGAGAAAAGGGAGTGTTGTGATTGTTGTACTTCCAAATGTAGTTGAGTATGCTATTGTTGCTTTGGGGATTATGGATTCTGGTGGTGTGTTTTCAGGTGCAAATCCAGCTTCACATACTTCAGAAATTAAGAAACAAGTTGAGTCTGCTGATGCCAAATTAATTGTCACAAATAGTACAACTCATGAAAAGGTGAAAAGTCTAGGACTACCTGTGATTGTCCTAGGAGATGAACTTGTTGAAGATGCAATGAATTGGAAAAAACTTCTTGAAGCAGCAGACAGGGCAGGCGGCGATTTAATGAAAGAACCGATAAACCAAAACGATCTTTGCGCCATGCCATTCTCGTCCGGCACAACAGGAATGTCAAAGGGAGTAATGCTTACACACAGGAATCTCGTCGCAAATCTTTGCTCTACACTCTTTAGTGTAGTGCCAGAAATGATTGGTCAAGTTACCACATTAGGGTTAATTCCATTTTTTCACATTTATGGCATCACTGGAATATGTTGTGCAACTATTAGGAACAAAGGGAAAGTTGTGGTTATGGGAAAATATGATTTGAAAATATTTTTGAATGCTTTGATTACACATGAGGTCACATTTGCACCTATTGTTCCACCTATTATTCTTGGTTTGGTTAAAAATCCTATAGTTGATGAATTTGATCTTAGTAAGCTTAAGCTTCAAGCTATTATGACTGCTGCTGCACCACTTGCACCTGAAATACTTACTTCCTTTCAACATAAGTTCCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGTTGCATCACACTAACATTTGCACAAAAAGGATTAGGAAGTACACATAAAAATTCAGTTGGTTTTATCCTTCCAAATTTGGAAGTGAAGTTTATTGATCCTGAGACAGGTAGATCCCTCCCAAGGAACACACCAGGGGAACTTTGTGTAAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTTGATGAGACTGCTCAAACTATTGACAAAAATGGATGGCTTCATACTGGTGACATTGGATTCATAGACGATGAAGAAAATGTTTTTATTGTTGATCGTATTAAGGAGTTGATTAAATATAAAGGCTTTCAAGTTGCTCCTGCAGAGTTAGAGGCTATTTTGTTGTCTCATTCATCGGTTGAAGATGCAGCTGTTGTACCATTACCAGATGAAGAGGCAGGGGAAATTCCAGCTGCAAGTGTTGTTTTGAGCAAAGGTGCAAAAGAGACTGAAGAGGATATTATGAACTATGTAGCTTCTAATGCTGCTCATTACAAAAAAGTGAGAGTGGTTCACTTTGTTGAAGCTATACCAAAATCACCTTCTGGTAAAATAATGAGAAGGCTTATCAAAGAGAAGATGATGGAAAAGATGAAGGAAAATTCTCTAACAAAATCCAACACTTAG 1659 0.3846 MGTYIENVVEEHEHIFHSQYSLVPVPDNVTLPEFVLQNVEFYGDKVAFVDAESGKEITYSEVARDIHRFSKALRSLGLRKGSVVIVVLPNVVEYAIVALGIMDSGGVFSGANPASHTSEIKKQVESADAKLIVTNSTTHEKVKSLGLPVIVLGDELVEDAMNWKKLLEAADRAGGDLMKEPINQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVVPEMIGQVTTLGLIPFFHIYGITGICCATIRNKGKVVVMGKYDLKIFLNALITHEVTFAPIVPPIILGLVKNPIVDEFDLSKLKLQAIMTAAAPLAPEILTSFQHKFPGVVVQEAYGLTEHSCITLTFAQKGLGSTHKNSVGFILPNLEVKFIDPETGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDKNGWLHTGDIGFIDDEENVFIVDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPLPDEEAGEIPAASVVLSKGAKETEEDIMNYVASNAAHYKKVRVVHFVEAIPKSPSGKIMRRLIKEKMMEKMKENSLTKSNT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01069 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 439 - -
Trre6g01069 552 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Trre6g01069 552 Gene3D - 440 544 IPR045851 -
Trre6g01069 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 537 - -
Trre6g01069 552 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
Trre6g01069 552 Gene3D - 13 439 IPR042099 -
Trre6g01069 552 CDD 4CL 25 532 - -
Trre6g01069 552 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Trre6g01069 552 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Trre6g01069 552 Pfam AMP-binding enzyme 38 444 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01069 Trre-Chr6 8296700 8300031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01069 10 539 Monolignol Biosynthesis Gene Families AT1G62940 73.120 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01069 K01904 - gmx:100814237 947.192