Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g01064 ATGAAGCGCAAATATCCCTTCTTTCACAATGGTCAAAAACCAAGCTCAAGTTCTGGTTCATCTATGTTGCATCAAGGTGCATATGCAAATACAAGAGCTCCAACAACTTTGATGAATCCTAGGAACGATGCCATTGTGCCTAAACTAGTTATGCGGAAAAAAATTACACTGCCATTCAAAAATGTGACACAAATTATGAGAAAAGCTTTGCCACCAAAGGCAAAAATATCTAATGGTGCAAAGAAAATGGTTCAAATATGCTCCTCAAAATTCATAAATTGGATAACCGAAAAAGCCAATGAGTATTGCAAAAGTGAGTCCAAAATGACTTTGGGAGGAGATGACATACTGTCGGCTATGAATTCTTTAGATTTTAATAACTATTTTGAATCTCTTAACATTTATCTCGAACAGTATCGCTATTGTAAGGAGATCGGGCCTATGCATCTAGTGGGTGAGATGCATATGCCCACTATACCAACTTTTGAGATTTCTGATCCCACCTTACCACCTCCACCACTAATTGGTGTTGGGTCAAACTCTTCCGTGAATCCAAATCCTATTTTTGAAATGGTCGAGGCAATAGACATGGATAAGTTTTGGGCTGAAGTGGATAATTTGGATGTTGGTTCTTCAGGCACTGCTTCAACGAACTTTGATCCTTCTACTGAGGTCAACTTTGATGGCATATGA 693 0.3853 MKRKYPFFHNGQKPSSSSGSSMLHQGAYANTRAPTTLMNPRNDAIVPKLVMRKKITLPFKNVTQIMRKALPPKAKISNGAKKMVQICSSKFINWITEKANEYCKSESKMTLGGDDILSAMNSLDFNNYFESLNIYLEQYRYCKEIGPMHLVGEMHMPTIPTFEISDPTLPPPPLIGVGSNSSVNPNPIFEMVEAIDMDKFWAEVDNLDVGSSGTASTNFDPSTEVNFDGI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g01064 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 49 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre6g01064 230 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g01064 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 56 120 IPR003958 -
Trre6g01064 230 SUPERFAMILY Histone-fold 55 140 IPR009072 GO:0046982
Trre6g01064 230 Gene3D Histone, subunit A 50 144 IPR009072 GO:0046982
Trre6g01064 230 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Trre6g01064 230 PRINTS CCAAT-binding transcription factor subunit A signature 122 140 - -
Trre6g01064 230 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g01064 Trre-Chr6 8262144 8263762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g01064 57 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 51.190 2.66e-25 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre6g01064 CBFD_NFYB_HMF 3.8e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g01064 K08065 - egt:105977409 94.7449